RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 UBE2HP62256 183 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 SPC24Q8NBT2 197 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 PRDM2Q13029 1718 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 GNAT3A8MTJ3 354 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 LDHCP07864 332 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 KIF4BQ2VIQ3 1234 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 CROCCP2Q86T23 111 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 IQCA1Q86XH1 822 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 ANKRD24Q8TF21 1146 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 SMARCC1Q92922 1105 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-203ENST00000409050 AIDAQ96BJ3 306 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 OPA1O60313 960 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 ZFYP08048 801 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-203ENST00000409050 KLHL34Q8N239 644 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 ARFGAP2Q8N6H7 521 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 PAF1Q8N7H5 531 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.05□□□□□ -1.28
SCN1A-203ENST00000409050 HYPKQ9NX55 129 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 FAM135AQ9P2D6 1515 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 NCOA1Q15788 1441 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 MRC2Q9UBG0 1479 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 ANKRD62A6NC57 917 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 MAP3K12Q12852 859 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 CACNA2D4Q7Z3S7 1137 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 C8orf76Q96K31 380 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 NUP160Q12769 1436 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 MEX3CQ5U5Q3 659 aaKnown RBP7.05□□□□□ -1.28
SCN1A-203ENST00000409050 USP25Q9UHP3 1055 aa7.05□□□□□ -1.28
SCN1A-203ENST00000409050 RUSC2Q8N2Y8 1516 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 WDHD1O75717 1129 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-203ENST00000409050 TMPOP42166 694 aaKnown RBP7.04□□□□□ -1.28
SCN1A-203ENST00000409050 IFFO1Q0D2I5 559 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 TAX1BP1Q86VP1 789 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 CUL5Q93034 780 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 SNAPC4Q5SXM2 1469 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 NBPF1Q3BBV0 1214 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 CEP112Q8N8E3 955 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 CLIP2Q9UDT6 1046 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 NDC80O14777 642 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 LMBR1Q8WVP7 490 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 CCDC77Q9BR77 488 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 CDK19Q9BWU1 502 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 ZNF76P36508 570 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 CCDC155Q8N6L0 562 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 SNX21Q969T3 373 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 CCDC61Q9Y6R9 512 aa7.04□□□□□ -1.28
SCN1A-203ENST00000409050 ARAP1Q96P48 1450 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 CYLC1P35663 651 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-203ENST00000409050 RBM25P49756 843 aaKnown RBP7.03□□□□□ -1.28
SCN1A-203ENST00000409050 GNAQP50148 359 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 CAVIN4Q5BKX8 364 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 CFAP70Q5T0N1 1121 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 SULT6B1Q6IMI4 303 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 CALML4Q96GE6 196 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 CFAP57Q96MR6 1250 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 MPHOSPH6Q99547 160 aaKnown RBP7.03□□□□□ -1.28
SCN1A-203ENST00000409050 NAP1L4Q99733 375 aaKnown RBP7.03□□□□□ -1.28
SCN1A-203ENST00000409050 RASAL2Q9UJF2 1139 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 EPRSP07814 1512 aaKnown RBP7.03□□□□□ -1.28
SCN1A-203ENST00000409050 KIAA0586Q9BVV6 1533 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 FSD2A1L4K1 749 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 NECTIN2Q92692 538 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 ANKRD36BQ8N2N9 1353 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 NUTM2FA1L443 756 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 SSRP1Q08945 709 aaKnown RBP7.03□□□□□ -1.28
SCN1A-203ENST00000409050 CLUL1Q15846 466 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 SPTY2D1Q68D10 685 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-203ENST00000409050 SYTL4Q96C24 671 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-203ENST00000409050 CUL7Q14999 1698 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 TNNT1P13805 278 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 SH3BGRP55822 239 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-203ENST00000409050 PIP4K2BP78356 416 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 HDAC1Q13547 482 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-203ENST00000409050 TXNDC2Q86VQ3 553 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 KRT222Q8N1A0 295 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 KCNG4Q8TDN1 519 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 PRAM1Q96QH2 718 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 TCP11L1Q9NUJ3 509 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 KIF4AO95239 1232 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 ATP2B1P20020 1258 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 FOSBP53539 338 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 TSNARE1Q96NA8 513 aa7.03□□□□□ -1.28
SCN1A-203ENST00000409050 MPHOSPH10O00566 681 aaKnown RBP7.02□□□□□ -1.29
SCN1A-203ENST00000409050 FYB1O15117 783 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 INSRP06213 1382 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 UQCRFS1P1P0C7P4 283 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 SLC5A1P13866 664 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 MYO1BO43795 1136 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 NBPF7P0C2Y1 421 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-203ENST00000409050 FERP16591 822 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 TERF1P54274 439 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 TAF7Q15545 349 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-203ENST00000409050 SELENOOQ9BVL4 669 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 CLCN1P35523 988 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 CCDC102BQ68D86 513 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 NUP133Q8WUM0 1156 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 BTBD11A6QL63 1104 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 HSF2BPO75031 334 aa7.02□□□□□ -1.29
SCN1A-203ENST00000409050 URI1O94763 535 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-203ENST00000409050 CATIPQ7Z7H3 387 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms