RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 MRC1P22897 1456 aa26.79■■□□□ 1.88
TPM1-208ENST00000404484 PANK1Q8TE04 598 aa26.78■■□□□ 1.88
TPM1-208ENST00000404484 HOXB7P09629 217 aa26.77■■□□□ 1.88
TPM1-208ENST00000404484 TOGARAM1Q9Y4F4 1720 aa26.76■■□□□ 1.88
TPM1-208ENST00000404484 TRIM27P14373 513 aa26.76■■□□□ 1.87
TPM1-208ENST00000404484 KCNQ4P56696 695 aa26.76■■□□□ 1.87
TPM1-208ENST00000404484 SLC52A2Q9HAB3 445 aa26.76■■□□□ 1.87
TPM1-208ENST00000404484 EIF4A1P60842 406 aaKnown RBP26.75■■□□□ 1.87
TPM1-208ENST00000404484 SLC27A3Q5K4L6 730 aa26.75■■□□□ 1.87
TPM1-208ENST00000404484 TMOD3Q9NYL9 352 aa26.75■■□□□ 1.87
TPM1-208ENST00000404484 ERVV-2B6SEH9 535 aa26.74■■□□□ 1.87
TPM1-208ENST00000404484 CCDC30Q5VVM6 783 aa26.74■■□□□ 1.87
TPM1-208ENST00000404484 API5Q9BZZ5 524 aaKnown RBP26.74■■□□□ 1.87
TPM1-208ENST00000404484 COG6Q9Y2V7 657 aa26.74■■□□□ 1.87
TPM1-208ENST00000404484 STK31Q9BXU1 1019 aa26.73■■□□□ 1.87
TPM1-208ENST00000404484 ITGB4P16144 1822 aa26.73■■□□□ 1.87
TPM1-208ENST00000404484 RLBP1P12271 317 aa26.72■■□□□ 1.87
TPM1-208ENST00000404484 CLUAP1Q96AJ1 413 aa26.72■■□□□ 1.87
TPM1-208ENST00000404484 MVPQ14764 893 aaKnown RBP26.71■■□□□ 1.87
TPM1-208ENST00000404484 ASAP1Q9ULH1 1129 aa26.71■■□□□ 1.87
TPM1-208ENST00000404484 PTPRCP08575 1304 aa26.7■■□□□ 1.87
TPM1-208ENST00000404484 CABP4P57796 275 aa26.7■■□□□ 1.86
TPM1-208ENST00000404484 SLC15A2Q16348 729 aa26.7■■□□□ 1.86
TPM1-208ENST00000404484 STK32BQ9NY57 414 aa26.7■■□□□ 1.86
TPM1-208ENST00000404484 CCNL1Q9UK58 526 aaPredicted RBP26.7■■□□□ 1.86
TPM1-208ENST00000404484 CACNA1FO60840 1977 aa26.69■■□□□ 1.86
TPM1-208ENST00000404484 PALLDQ8WX93 1383 aa26.69■■□□□ 1.86
TPM1-208ENST00000404484 TCERG1O14776 1098 aaKnown RBP26.69■■□□□ 1.86
TPM1-208ENST00000404484 SMARCC1Q92922 1105 aaPredicted RBP26.69■■□□□ 1.86
TPM1-208ENST00000404484 DDX19BQ9UMR2 479 aa26.69■■□□□ 1.86
TPM1-208ENST00000404484 TNNQ9UQP3 1299 aa26.69■■□□□ 1.86
TPM1-208ENST00000404484 NFATC2IPQ8NCF5 419 aa26.67■■□□□ 1.86
TPM1-208ENST00000404484 CHMP4BQ9H444 224 aaKnown RBP26.67■■□□□ 1.86
TPM1-208ENST00000404484 ATG3Q9NT62 314 aa26.67■■□□□ 1.86
TPM1-208ENST00000404484 HDGFL1Q5TGJ6 251 aa26.67■■□□□ 1.86
TPM1-208ENST00000404484 SLC4A2P04920 1241 aa26.66■■□□□ 1.86
TPM1-208ENST00000404484 ZNF827Q17R98 1081 aa26.66■■□□□ 1.86
TPM1-208ENST00000404484 ZNF790Q6PG37 636 aa26.66■■□□□ 1.86
TPM1-208ENST00000404484 PDGFDQ9GZP0 370 aaPredicted RBP26.66■■□□□ 1.86
TPM1-208ENST00000404484 ABCC4O15439 1325 aa26.66■■□□□ 1.86
TPM1-208ENST00000404484 LY75O60449 1722 aa26.66■■□□□ 1.86
TPM1-208ENST00000404484 HEG1Q9ULI3 1381 aa26.66■■□□□ 1.86
TPM1-208ENST00000404484 KCNQ3O43525 872 aa26.65■■□□□ 1.86
TPM1-208ENST00000404484 ITPRIPQ8IWB1 547 aa26.65■■□□□ 1.86
TPM1-208ENST00000404484 AKT1S1Q96B36 256 aa26.65■■□□□ 1.86
TPM1-208ENST00000404484 TTC5Q8N0Z6 440 aa26.64■■□□□ 1.86
TPM1-208ENST00000404484 TMEM57Q8N5G2 664 aa26.64■■□□□ 1.86
TPM1-208ENST00000404484 PAPPAQ13219 1627 aa26.62■■□□□ 1.85
TPM1-208ENST00000404484 LOC102724428A0A0B4J2F2 783 aa26.62■■□□□ 1.85
TPM1-208ENST00000404484 GIGYF1O75420 1035 aaPredicted RBP26.62■■□□□ 1.85
TPM1-208ENST00000404484 SIK1P57059 783 aa26.62■■□□□ 1.85
TPM1-208ENST00000404484 FMNL2Q96PY5 1086 aa26.58■■□□□ 1.85
TPM1-208ENST00000404484 SLC39A6Q13433 755 aa26.58■■□□□ 1.85
TPM1-208ENST00000404484 CENPQQ7L2Z9 268 aaPredicted RBP26.58■■□□□ 1.85
TPM1-208ENST00000404484 TFCP2L1Q9NZI6 479 aa26.58■■□□□ 1.85
TPM1-208ENST00000404484 EIF2S2P20042 333 aaKnown RBP26.57■■□□□ 1.84
TPM1-208ENST00000404484 FLIIQ13045 1269 aa26.57■■□□□ 1.84
TPM1-208ENST00000404484 SLC4A9Q96Q91 983 aa26.57■■□□□ 1.84
TPM1-208ENST00000404484 ATP6V1AP38606 617 aa26.56■■□□□ 1.84
TPM1-208ENST00000404484 NECTIN2Q92692 538 aa26.56■■□□□ 1.84
TPM1-208ENST00000404484 RBM42Q9BTD8 480 aaKnown RBP26.56■■□□□ 1.84
TPM1-208ENST00000404484 DBF4Q9UBU7 674 aaPredicted RBP26.56■■□□□ 1.84
TPM1-208ENST00000404484 ITPK1Q13572 414 aa26.55■■□□□ 1.84
TPM1-208ENST00000404484 INTS3Q68E01 1043 aaKnown RBP26.55■■□□□ 1.84
TPM1-208ENST00000404484 SNRPA1P09661 255 aaKnown RBP26.54■■□□□ 1.84
TPM1-208ENST00000404484 PTCD1O75127 700 aaKnown RBP26.54■■□□□ 1.84
TPM1-208ENST00000404484 G2E3Q7L622 706 aa26.54■■□□□ 1.84
TPM1-208ENST00000404484 LINC00116Q8NCU8 138 aa26.54■■□□□ 1.84
TPM1-208ENST00000404484 ZNF496Q96IT1 587 aaPredicted RBP26.54■■□□□ 1.84
TPM1-208ENST00000404484 ZBTB7AO95365 584 aa26.53■■□□□ 1.84
TPM1-208ENST00000404484 HMGB2P26583 209 aaKnown RBP26.53■■□□□ 1.84
TPM1-208ENST00000404484 FKBP5Q13451 457 aaPredicted RBP26.53■■□□□ 1.84
TPM1-208ENST00000404484 CHPF2Q9P2E5 772 aa26.53■■□□□ 1.84
TPM1-208ENST00000404484 PNPLA7Q6ZV29 1317 aa26.52■■□□□ 1.84
TPM1-208ENST00000404484 KDM2BQ8NHM5 1336 aa26.52■■□□□ 1.84
TPM1-208ENST00000404484 ZBTB40Q9NUA8 1239 aa26.52■■□□□ 1.84
TPM1-208ENST00000404484 UBR2Q8IWV8 1755 aa26.52■■□□□ 1.84
TPM1-208ENST00000404484 CCT4P50991 539 aaKnown RBP26.51■■□□□ 1.83
TPM1-208ENST00000404484 SPON1Q9HCB6 807 aa26.51■■□□□ 1.83
TPM1-208ENST00000404484 PXDNLA1KZ92 1463 aa26.51■■□□□ 1.83
TPM1-208ENST00000404484 CASZ1Q86V15 1759 aa26.5■■□□□ 1.83
TPM1-208ENST00000404484 HYPKQ9NX55 129 aa26.5■■□□□ 1.83
TPM1-208ENST00000404484 TAF1LQ8IZX4 1826 aa26.49■■□□□ 1.83
TPM1-208ENST00000404484 C5P01031 1676 aa26.49■■□□□ 1.83
TPM1-208ENST00000404484 ZBTB7BO15156 539 aaPredicted RBP26.49■■□□□ 1.83
TPM1-208ENST00000404484 ATF5Q9Y2D1 282 aaPredicted RBP26.49■■□□□ 1.83
TPM1-208ENST00000404484 LAMB4A4D0S4 1761 aa26.48■■□□□ 1.83
TPM1-208ENST00000404484 AMIGO3Q86WK7 504 aa26.48■■□□□ 1.83
TPM1-208ENST00000404484 DDX21Q9NR30 783 aaKnown RBP eCLIP26.48■■□□□ 1.83
TPM1-208ENST00000404484 COL23A1Q86Y22 540 aaPredicted RBP26.47■■□□□ 1.83
TPM1-208ENST00000404484 AK7Q96M32 723 aa26.47■■□□□ 1.83
TPM1-208ENST00000404484 RWDD1Q9H446 243 aaPredicted RBP26.47■■□□□ 1.83
TPM1-208ENST00000404484 KCPQ6ZWJ8 1503 aa26.47■■□□□ 1.83
TPM1-208ENST00000404484 SMIM5Q71RC9 77 aa26.46■■□□□ 1.83
TPM1-208ENST00000404484 PCDHB15Q9Y5E8 787 aa26.46■■□□□ 1.83
TPM1-208ENST00000404484 LRP5O75197 1615 aa26.46■■□□□ 1.83
TPM1-208ENST00000404484 MTFR1LQ9H019 292 aa26.46■■□□□ 1.83
TPM1-208ENST00000404484 ERBB4Q15303 1308 aa26.45■■□□□ 1.83
TPM1-208ENST00000404484 N4BP2Q86UW6 1770 aaPredicted RBP26.45■■□□□ 1.83
TPM1-208ENST00000404484 PRAMEF22A3QJZ6 481 aa26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms