RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ZCRB1Q8TBF4 217 aaKnown RBP12.43□□□□□ -0.42
VPS53-203ENST00000401468 MS4A4AQ96JQ5 239 aa12.43□□□□□ -0.42
VPS53-203ENST00000401468 SPON1Q9HCB6 807 aa12.43□□□□□ -0.42
VPS53-203ENST00000401468 FLT4P35916 1363 aa12.43□□□□□ -0.42
VPS53-203ENST00000401468 UBR3Q6ZT12 1888 aa12.42□□□□□ -0.42
VPS53-203ENST00000401468 RGL2O15211 777 aa12.42□□□□□ -0.42
VPS53-203ENST00000401468 SLC15A2Q16348 729 aa12.42□□□□□ -0.42
VPS53-203ENST00000401468 MICALL2Q8IY33 904 aa12.42□□□□□ -0.42
VPS53-203ENST00000401468 PPP2R1AP30153 589 aa12.41□□□□□ -0.42
VPS53-203ENST00000401468 NCAPD2Q15021 1401 aa12.41□□□□□ -0.42
VPS53-203ENST00000401468 MYBBP1AQ9BQG0 1328 aaKnown RBP12.4□□□□□ -0.42
VPS53-203ENST00000401468 SMIM5Q71RC9 77 aa12.4□□□□□ -0.42
VPS53-203ENST00000401468 RAPGEF4Q8WZA2 1011 aa12.4□□□□□ -0.42
VPS53-203ENST00000401468 COL24A1Q17RW2 1714 aa12.4□□□□□ -0.43
VPS53-203ENST00000401468 TATP17735 454 aaPredicted RBP12.39□□□□□ -0.43
VPS53-203ENST00000401468 C4BP0C0L5 1744 aa12.38□□□□□ -0.43
VPS53-203ENST00000401468 CYP27B1O15528 508 aa12.38□□□□□ -0.43
VPS53-203ENST00000401468 PTGER2P43116 358 aa12.38□□□□□ -0.43
VPS53-203ENST00000401468 DIEXFQ68CQ4 756 aaKnown RBP12.38□□□□□ -0.43
VPS53-203ENST00000401468 MPRIPQ6WCQ1 1025 aa12.38□□□□□ -0.43
VPS53-203ENST00000401468 ANP32CO43423 234 aa12.37□□□□□ -0.43
VPS53-203ENST00000401468 MTHFSP49914 203 aa12.37□□□□□ -0.43
VPS53-203ENST00000401468 EMP3P54852 163 aa12.37□□□□□ -0.43
VPS53-203ENST00000401468 EYA1Q99502 592 aa12.37□□□□□ -0.43
VPS53-203ENST00000401468 SCN11AQ9UI33 1791 aa12.37□□□□□ -0.43
VPS53-203ENST00000401468 MYH14Q7Z406 1995 aaKnown RBP12.36□□□□□ -0.43
VPS53-203ENST00000401468 EIF4A2Q14240 407 aaKnown RBP12.36□□□□□ -0.43
VPS53-203ENST00000401468 CCNL1Q9UK58 526 aaPredicted RBP12.36□□□□□ -0.43
VPS53-203ENST00000401468 MSL1Q68DK7 614 aa12.35□□□□□ -0.43
VPS53-203ENST00000401468 FHDC1Q9C0D6 1143 aaPredicted RBP12.35□□□□□ -0.43
VPS53-203ENST00000401468 GOLGB1Q14789 3259 aaKnown RBP12.35□□□□□ -0.43
VPS53-203ENST00000401468 PNPLA7Q6ZV29 1317 aa12.35□□□□□ -0.43
VPS53-203ENST00000401468 PCDH11XQ9BZA7 1347 aa12.35□□□□□ -0.43
VPS53-203ENST00000401468 PCDH11YQ9BZA8 1340 aa12.35□□□□□ -0.43
VPS53-203ENST00000401468 PLEKHG2Q9H7P9 1386 aa12.34□□□□□ -0.43
VPS53-203ENST00000401468 FBXO22Q8NEZ5 403 aa12.34□□□□□ -0.43
VPS53-203ENST00000401468 TFCP2L1Q9NZI6 479 aa12.34□□□□□ -0.43
VPS53-203ENST00000401468 COL5A3P25940 1745 aaPredicted RBP12.34□□□□□ -0.43
VPS53-203ENST00000401468 KDRP35968 1356 aa12.33□□□□□ -0.44
VPS53-203ENST00000401468 IL13P35225 146 aa12.33□□□□□ -0.44
VPS53-203ENST00000401468 AMIGO3Q86WK7 504 aa12.33□□□□□ -0.44
VPS53-203ENST00000401468 AEBP1Q8IUX7 1158 aa12.33□□□□□ -0.44
VPS53-203ENST00000401468 MFRPQ9BY79 579 aa12.33□□□□□ -0.44
VPS53-203ENST00000401468 IGSF1Q8N6C5 1336 aa12.33□□□□□ -0.44
VPS53-203ENST00000401468 N4BP2Q86UW6 1770 aaPredicted RBP12.33□□□□□ -0.44
VPS53-203ENST00000401468 PALLDQ8WX93 1383 aa12.32□□□□□ -0.44
VPS53-203ENST00000401468 C4AP0C0L4 1744 aa12.32□□□□□ -0.44
VPS53-203ENST00000401468 HOXB3P14651 431 aaPredicted RBP12.32□□□□□ -0.44
VPS53-203ENST00000401468 ZNF710Q8N1W2 664 aa12.32□□□□□ -0.44
VPS53-203ENST00000401468 MTFR1LQ9H019 292 aa12.32□□□□□ -0.44
VPS53-203ENST00000401468 CCER2I3L3R5 266 aa12.31□□□□□ -0.44
VPS53-203ENST00000401468 PHF14O94880 888 aa12.31□□□□□ -0.44
VPS53-203ENST00000401468 DOK7Q18PE1 504 aa12.31□□□□□ -0.44
VPS53-203ENST00000401468 TMEM92Q6UXU6 159 aa12.31□□□□□ -0.44
VPS53-203ENST00000401468 PIGBQ92521 554 aa12.31□□□□□ -0.44
VPS53-203ENST00000401468 WWC3Q9ULE0 1092 aa12.31□□□□□ -0.44
VPS53-203ENST00000401468 COL23A1Q86Y22 540 aaPredicted RBP12.3□□□□□ -0.44
VPS53-203ENST00000401468 CFAP53Q96M91 514 aa12.3□□□□□ -0.44
VPS53-203ENST00000401468 ARXQ96QS3 562 aa12.3□□□□□ -0.44
VPS53-203ENST00000401468 ASAP1Q9ULH1 1129 aa12.3□□□□□ -0.44
VPS53-203ENST00000401468 DLG5Q8TDM6 1919 aa12.29□□□□□ -0.44
VPS53-203ENST00000401468 TJP1Q07157 1748 aa12.29□□□□□ -0.44
VPS53-203ENST00000401468 DIAPH1O60610 1272 aaKnown RBP12.29□□□□□ -0.44
VPS53-203ENST00000401468 SLC27A3Q5K4L6 730 aa12.29□□□□□ -0.44
VPS53-203ENST00000401468 SYT17Q9BSW7 474 aa12.29□□□□□ -0.44
VPS53-203ENST00000401468 GIGYF1O75420 1035 aaPredicted RBP12.28□□□□□ -0.44
VPS53-203ENST00000401468 CCDC184Q52MB2 194 aa12.28□□□□□ -0.44
VPS53-203ENST00000401468 NLGN2Q8NFZ4 835 aa12.28□□□□□ -0.44
VPS53-203ENST00000401468 SPG7Q9UQ90 795 aa12.28□□□□□ -0.44
VPS53-203ENST00000401468 ADAMTS7Q9UKP4 1686 aa12.27□□□□□ -0.45
VPS53-203ENST00000401468 FAM205CA6NFA0 338 aa12.27□□□□□ -0.45
VPS53-203ENST00000401468 SLC34A2O95436 690 aa12.27□□□□□ -0.45
VPS53-203ENST00000401468 PHKG2P15735 406 aa12.27□□□□□ -0.45
VPS53-203ENST00000401468 LINC00116Q8NCU8 138 aa12.27□□□□□ -0.45
VPS53-203ENST00000401468 KDM6AO15550 1401 aaPredicted RBP12.27□□□□□ -0.45
VPS53-203ENST00000401468 RIMBP2O15034 1052 aa12.26□□□□□ -0.45
VPS53-203ENST00000401468 HMOX1P09601 288 aa12.26□□□□□ -0.45
VPS53-203ENST00000401468 ITPK1Q13572 414 aa12.26□□□□□ -0.45
VPS53-203ENST00000401468 ZNF530Q6P9A1 599 aaPredicted RBP12.26□□□□□ -0.45
VPS53-203ENST00000401468 PNISRQ8TF01 805 aaKnown RBP12.26□□□□□ -0.45
VPS53-203ENST00000401468 TMOD3Q9NYL9 352 aa12.26□□□□□ -0.45
VPS53-203ENST00000401468 SULT6B1Q6IMI4 303 aa12.25□□□□□ -0.45
VPS53-203ENST00000401468 HS3ST6Q96QI5 342 aa12.25□□□□□ -0.45
VPS53-203ENST00000401468 CACNA1SQ13698 1873 aa12.25□□□□□ -0.45
VPS53-203ENST00000401468 SIPA1L3O60292 1781 aaPredicted RBP12.24□□□□□ -0.45
VPS53-203ENST00000401468 IFNL2Q8IZJ0 200 aa12.24□□□□□ -0.45
VPS53-203ENST00000401468 AK7Q96M32 723 aa12.24□□□□□ -0.45
VPS53-203ENST00000401468 ATG3Q9NT62 314 aa12.24□□□□□ -0.45
VPS53-203ENST00000401468 NUDCQ9Y266 331 aa12.24□□□□□ -0.45
VPS53-203ENST00000401468 KIAA1551Q9HCM1 1747 aa12.23□□□□□ -0.45
VPS53-203ENST00000401468 LOC102724428A0A0B4J2F2 783 aa12.23□□□□□ -0.45
VPS53-203ENST00000401468 FCHSD2O94868 740 aa12.23□□□□□ -0.45
VPS53-203ENST00000401468 HOXB1P14653 301 aaPredicted RBP12.23□□□□□ -0.45
VPS53-203ENST00000401468 POLD1P28340 1107 aa12.23□□□□□ -0.45
VPS53-203ENST00000401468 SIK1P57059 783 aa12.23□□□□□ -0.45
VPS53-203ENST00000401468 NKX1-1Q15270 411 aaPredicted RBP12.23□□□□□ -0.45
VPS53-203ENST00000401468 RSPH6AQ9H0K4 717 aa12.23□□□□□ -0.45
VPS53-203ENST00000401468 AFDNP55196 1824 aaKnown RBP12.23□□□□□ -0.45
VPS53-203ENST00000401468 ATP6V1AP38606 617 aa12.22□□□□□ -0.45
VPS53-203ENST00000401468 GPR162Q16538 588 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms