RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 EVI5LQ96CN4 794 aa6.35□□□□□ -1.39
VPS13C-204ENST00000395898 RAPGEF6Q8TEU7 1601 aa6.35□□□□□ -1.39
VPS13C-204ENST00000395898 SSBP05455 408 aaKnown RBP eCLIP6.35□□□□□ -1.39
VPS13C-204ENST00000395898 SLC5A1P13866 664 aa6.35□□□□□ -1.39
VPS13C-204ENST00000395898 ZC3H6P61129 1189 aaKnown RBP6.35□□□□□ -1.39
VPS13C-204ENST00000395898 EHMT1Q9H9B1 1298 aa6.35□□□□□ -1.39
VPS13C-204ENST00000395898 SEPT11Q9NVA2 429 aaKnown RBP6.35□□□□□ -1.39
VPS13C-204ENST00000395898 POLR3DP05423 398 aaPredicted RBP6.35□□□□□ -1.39
VPS13C-204ENST00000395898 CCDC12Q8WUD4 166 aaPredicted RBP6.35□□□□□ -1.39
VPS13C-204ENST00000395898 KIF21AQ7Z4S6 1674 aa6.35□□□□□ -1.39
VPS13C-204ENST00000395898 MINDY4BA8MYZ0 360 aa6.35□□□□□ -1.39
VPS13C-204ENST00000395898 RARSP54136 660 aaKnown RBP6.35□□□□□ -1.39
VPS13C-204ENST00000395898 AMPD3Q01432 767 aa6.35□□□□□ -1.39
VPS13C-204ENST00000395898 SLC12A7Q9Y666 1083 aa6.35□□□□□ -1.39
VPS13C-204ENST00000395898 RPRD2Q5VT52 1461 aaKnown RBP6.34□□□□□ -1.39
VPS13C-204ENST00000395898 A0A087WZG4 1122 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 TAF4BQ92750 862 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 CRACR2BQ8N4Y2 399 aaPredicted RBP6.34□□□□□ -1.39
VPS13C-204ENST00000395898 KIF5CO60282 957 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 NEBLO76041 1014 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 SFPQP23246 707 aaKnown RBP eCLIP6.34□□□□□ -1.39
VPS13C-204ENST00000395898 CACNA2D4Q7Z3S7 1137 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 CATIPQ7Z7H3 387 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 KANK3Q6NY19 840 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 NCOA1Q15788 1441 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 KIF18AQ8NI77 898 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 CENPHQ9H3R5 247 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 PTCD1O75127 700 aaKnown RBP6.34□□□□□ -1.39
VPS13C-204ENST00000395898 UBXN4Q92575 508 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 CRACR2AQ9BSW2 395 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 BOLA2Q9H3K6 86 aa6.34□□□□□ -1.39
VPS13C-204ENST00000395898 FILIP1Q7Z7B0 1213 aa6.34□□□□□ -1.4
VPS13C-204ENST00000395898 CCDC83Q8IWF9 413 aa6.34□□□□□ -1.4
VPS13C-204ENST00000395898 CUL5Q93034 780 aa6.34□□□□□ -1.4
VPS13C-204ENST00000395898 RALGAPBQ86X10 1494 aa6.34□□□□□ -1.4
VPS13C-204ENST00000395898 CAVIN2O95810 425 aa6.34□□□□□ -1.4
VPS13C-204ENST00000395898 CETN1Q12798 172 aa6.34□□□□□ -1.4
VPS13C-204ENST00000395898 GRIN2AQ12879 1464 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 PTPN14Q15678 1187 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 MCM10Q7L590 875 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 RPGRQ92834 1020 aaKnown RBP6.33□□□□□ -1.4
VPS13C-204ENST00000395898 ANKRD18BA2A2Z9 1011 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 SSRP1Q08945 709 aaKnown RBP6.33□□□□□ -1.4
VPS13C-204ENST00000395898 CCDC91Q7Z6B0 441 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 KIF5BP33176 963 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 CDC5LQ99459 802 aaKnown RBP6.33□□□□□ -1.4
VPS13C-204ENST00000395898 LIMCH1Q9UPQ0 1083 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 BAG4O95429 457 aaKnown RBP6.33□□□□□ -1.4
VPS13C-204ENST00000395898 CASQ1P31415 396 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 WAPLQ7Z5K2 1190 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 TAX1BP1Q86VP1 789 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 INCENPQ9NQS7 918 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 WASLO00401 505 aaPredicted RBP6.33□□□□□ -1.4
VPS13C-204ENST00000395898 USO1O60763 962 aaKnown RBP6.33□□□□□ -1.4
VPS13C-204ENST00000395898 PDE4BQ07343 736 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 SSH1Q8WYL5 1049 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 FANCAO15360 1455 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 DUOX2Q9NRD8 1548 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 SYCE3A1L190 88 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 BAG3O95817 575 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 PIP4K2BP78356 416 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 CNNM3Q8NE01 707 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 NUTM1Q86Y26 1132 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 MYD88Q99836 296 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 HMG20BQ9P0W2 317 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 ABCC5O15440 1437 aa6.33□□□□□ -1.4
VPS13C-204ENST00000395898 ESPNB1AK53 854 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 NEMFO60524 1076 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 DNAAF4Q8WXU2 420 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 TAOK3Q9H2K8 898 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 GSDMDP57764 484 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 MPRIPQ6WCQ1 1025 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 TCP11L1Q9NUJ3 509 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 UQCRHLA0A096LP55 91 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 UQCRHP07919 91 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 ZSCAN30Q86W11 494 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 IL16Q14005 1332 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 ASXL1Q8IXJ9 1541 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 GOLGA6L9A6NEM1 432 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 TAF3Q5VWG9 929 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 STXBP4Q6ZWJ1 553 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 DDX11Q96FC9 970 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 ZSCAN16Q9H4T2 348 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-204ENST00000395898 TOP1P11387 765 aaKnown RBP6.32□□□□□ -1.4
VPS13C-204ENST00000395898 ANAPC15P60006 121 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 BICDL1Q6ZP65 573 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 TRMT112Q9UI30 125 aaKnown RBP6.32□□□□□ -1.4
VPS13C-204ENST00000395898 TMCO3Q6UWJ1 677 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 CALML4Q96GE6 196 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 PLB1Q6P1J6 1458 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 DMRT2Q9Y5R5 561 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 EXOC5O00471 708 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 PPP1R42Q7Z4L9 355 aa6.32□□□□□ -1.4
VPS13C-204ENST00000395898 SPINK5Q9NQ38 1064 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 CWC25Q9NXE8 425 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 MIS18AQ9NYP9 233 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 TTC21AQ8NDW8 1320 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 IFIT3O14879 490 aaKnown RBP6.31□□□□□ -1.4
VPS13C-204ENST00000395898 FLIIQ13045 1269 aa6.31□□□□□ -1.4
VPS13C-204ENST00000395898 SPTY2D1Q68D10 685 aaPredicted RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms