RNA–Protein interactions for RNA: ENST00000394768.6

SYNE2-205, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 11,095 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-205ENST00000394768 ZNF444Q8N0Y2 327 aaPredicted RBP8.6□□□□□ -1.03
SYNE2-205ENST00000394768 GABPB2Q8TAK5 448 aaPredicted RBP8.6□□□□□ -1.03
SYNE2-205ENST00000394768 TCP11L1Q9NUJ3 509 aa8.6□□□□□ -1.03
SYNE2-205ENST00000394768 CATIPQ7Z7H3 387 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 C16orf71Q8IYS4 520 aaPredicted RBP8.59□□□□□ -1.03
SYNE2-205ENST00000394768 ZGPATQ8N5A5 531 aaKnown RBP8.59□□□□□ -1.03
SYNE2-205ENST00000394768 SCAND2PQ9GZW5 306 aaPredicted RBP8.59□□□□□ -1.03
SYNE2-205ENST00000394768 CIZ1Q9ULV3 898 aaPredicted RBP8.59□□□□□ -1.03
SYNE2-205ENST00000394768 KANK4Q5T7N3 995 aaPredicted RBP8.59□□□□□ -1.03
SYNE2-205ENST00000394768 CABP5Q9NP86 173 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 CLIP2Q9UDT6 1046 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 CCDC194A0A1B0GVG4 234 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 YEATS4O95619 227 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 SNX16P57768 344 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 PPP1R14CQ8TAE6 165 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 UBXN4Q92575 508 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 IQCGQ9H095 443 aaKnown RBP8.59□□□□□ -1.03
SYNE2-205ENST00000394768 CFAP100Q494V2 611 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 ODF2LQ9ULJ1 636 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 RTEL1-TNFRSF6BF6WH68 1400 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 LMAN1P49257 510 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 WDR78Q5VTH9 848 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 CTNNBL1Q8WYA6 563 aaPredicted RBP8.59□□□□□ -1.03
SYNE2-205ENST00000394768 TBC1D5Q92609 795 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 ATP2A1O14983 1001 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 NEMFO60524 1076 aa8.59□□□□□ -1.03
SYNE2-205ENST00000394768 BMS1Q14692 1282 aaKnown RBP8.59□□□□□ -1.03
SYNE2-205ENST00000394768 DDX54Q8TDD1 881 aaKnown RBP8.58□□□□□ -1.04
SYNE2-205ENST00000394768 PDRG1Q9NUG6 133 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 MKRN1Q9UHC7 482 aaKnown RBP8.58□□□□□ -1.04
SYNE2-205ENST00000394768 CEBPZQ03701 1054 aaKnown RBP8.58□□□□□ -1.04
SYNE2-205ENST00000394768 SYNCQ9H7C4 482 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 SLC4A2P04920 1241 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 SH2B1Q9NRF2 756 aaPredicted RBP8.58□□□□□ -1.04
SYNE2-205ENST00000394768 GAS8O95995 478 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 CCDC96Q2M329 555 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 METTL24Q5JXM2 366 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 MAP3K11Q16584 847 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 CCDC113Q9H0I3 377 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 MROH2BQ7Z745 1585 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 PRC1O43663 620 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 STX6O43752 255 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 TRAK2O60296 914 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 DDX46Q7L014 1031 aaKnown RBP8.58□□□□□ -1.04
SYNE2-205ENST00000394768 DNAAF4Q8WXU2 420 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 IMPG2Q9BZV3 1241 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 BMP15O95972 392 aa8.58□□□□□ -1.04
SYNE2-205ENST00000394768 MACROD2A1Z1Q3 448 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 WDR63Q8IWG1 891 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 EXOC6Q8TAG9 804 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 TTC14Q96N46 770 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 ANO10Q9NW15 660 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 RASAL2Q9UJF2 1139 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 IDH1O75874 414 aaKnown RBP8.57□□□□□ -1.04
SYNE2-205ENST00000394768 ST5P78524 1137 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 FGD6Q6ZV73 1430 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 FILIP1Q7Z7B0 1213 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 PRKAR2BP31323 418 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 CDC5LQ99459 802 aaKnown RBP8.57□□□□□ -1.04
SYNE2-205ENST00000394768 HMGB3O15347 200 aaKnown RBP8.57□□□□□ -1.04
SYNE2-205ENST00000394768 SRGAP3O43295 1099 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 FAM193AP78312 1265 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 NDC80O14777 642 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 NUTM2BA6NNL0 878 aaPredicted RBP8.57□□□□□ -1.04
SYNE2-205ENST00000394768 NUTM2EB1AL46 878 aaPredicted RBP8.57□□□□□ -1.04
SYNE2-205ENST00000394768 PRPF40AO75400 957 aaKnown RBP8.57□□□□□ -1.04
SYNE2-205ENST00000394768 ARID4AP29374 1257 aaPredicted RBP8.57□□□□□ -1.04
SYNE2-205ENST00000394768 NUTM2AQ8IVF1 878 aaPredicted RBP8.57□□□□□ -1.04
SYNE2-205ENST00000394768 GOPCQ9HD26 462 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 ABCF2Q9UG63 623 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 TIGD1Q96MW7 591 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 SLC12A7Q9Y666 1083 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 CASQ1P31415 396 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 IFIT5Q13325 482 aaKnown RBP8.57□□□□□ -1.04
SYNE2-205ENST00000394768 SYCP3Q8IZU3 236 aa8.57□□□□□ -1.04
SYNE2-205ENST00000394768 NSRP1Q9H0G5 558 aaKnown RBP8.57□□□□□ -1.04
SYNE2-205ENST00000394768 K7ELQ4 463 aaPredicted RBP8.56□□□□□ -1.04
SYNE2-205ENST00000394768 GLRX3O76003 335 aaKnown RBP8.56□□□□□ -1.04
SYNE2-205ENST00000394768 GSDMDP57764 484 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 TUBB4BP68371 445 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 CEP128Q6ZU80 1094 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 RNF214Q8ND24 703 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 RMND1Q9NWS8 449 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 KIF18AQ8NI77 898 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 FAM135AQ9P2D6 1515 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 MYL6BP14649 208 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 NUTM2GQ5VZR2 741 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 ANAPC4Q9UJX5 808 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 CKAP4Q07065 602 aaKnown RBP8.56□□□□□ -1.04
SYNE2-205ENST00000394768 CEP112Q8N8E3 955 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 GNAT3A8MTJ3 354 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 GRIN2BQ13224 1484 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 TBCAO75347 108 aaKnown RBP8.56□□□□□ -1.04
SYNE2-205ENST00000394768 JAKMIP2Q96AA8 810 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 GMNNO75496 209 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 SPECC1Q5M775 1068 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 NUP88Q99567 741 aaPredicted RBP8.56□□□□□ -1.04
SYNE2-205ENST00000394768 MAP4K4O95819 1239 aaPredicted RBP8.56□□□□□ -1.04
SYNE2-205ENST00000394768 UBE4AQ14139 1066 aa8.56□□□□□ -1.04
SYNE2-205ENST00000394768 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms