RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 HOXB7P09629 217 aa11.77□□□□□ -0.52
COL6A3-204ENST00000392003 MX1P20591 662 aa11.77□□□□□ -0.52
COL6A3-204ENST00000392003 AKAP4Q5JQC9 854 aa11.77□□□□□ -0.52
COL6A3-204ENST00000392003 CHD2O14647 1828 aaKnown RBP11.77□□□□□ -0.53
COL6A3-204ENST00000392003 NWD1Q149M9 1564 aa11.77□□□□□ -0.53
COL6A3-204ENST00000392003 BTBD11A6QL63 1104 aa11.77□□□□□ -0.53
COL6A3-204ENST00000392003 RAB3GAP1Q15042 981 aa11.77□□□□□ -0.53
COL6A3-204ENST00000392003 CHRNA2Q15822 529 aa11.77□□□□□ -0.53
COL6A3-204ENST00000392003 SKOR2Q2VWA4 1001 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-204ENST00000392003 USP54Q70EL1 1684 aa11.77□□□□□ -0.53
COL6A3-204ENST00000392003 LRRC37A3O60309 1634 aa11.77□□□□□ -0.53
COL6A3-204ENST00000392003 CD2BP2O95400 341 aaKnown RBP11.76□□□□□ -0.53
COL6A3-204ENST00000392003 RILPL2Q969X0 211 aa11.76□□□□□ -0.53
COL6A3-204ENST00000392003 LGR6Q9HBX8 967 aa11.76□□□□□ -0.53
COL6A3-204ENST00000392003 CACNA1FO60840 1977 aa11.76□□□□□ -0.53
COL6A3-204ENST00000392003 PNMA6EA0A0J9YXQ4 647 aa11.76□□□□□ -0.53
COL6A3-204ENST00000392003 DDIT3P35638 169 aa11.76□□□□□ -0.53
COL6A3-204ENST00000392003 EIF4A1P60842 406 aaKnown RBP11.76□□□□□ -0.53
COL6A3-204ENST00000392003 USP44Q9H0E7 712 aa11.76□□□□□ -0.53
COL6A3-204ENST00000392003 PHAXQ9H814 394 aaKnown RBP11.76□□□□□ -0.53
COL6A3-204ENST00000392003 C1orf167Q5SNV9 1468 aa11.75□□□□□ -0.53
COL6A3-204ENST00000392003 RAB11FIP3O75154 756 aa11.75□□□□□ -0.53
COL6A3-204ENST00000392003 TATP17735 454 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-204ENST00000392003 HDAC5Q9UQL6 1122 aa11.75□□□□□ -0.53
COL6A3-204ENST00000392003 PXDNLA1KZ92 1463 aa11.75□□□□□ -0.53
COL6A3-204ENST00000392003 NUCB2P80303 420 aa11.75□□□□□ -0.53
COL6A3-204ENST00000392003 CEMIPQ8WUJ3 1361 aa11.75□□□□□ -0.53
COL6A3-204ENST00000392003 LTN1O94822 1766 aa11.75□□□□□ -0.53
COL6A3-204ENST00000392003 SURF6O75683 361 aaKnown RBP11.74□□□□□ -0.53
COL6A3-204ENST00000392003 DNAAF4Q8WXU2 420 aa11.74□□□□□ -0.53
COL6A3-204ENST00000392003 PDCL3Q9H2J4 239 aa11.74□□□□□ -0.53
COL6A3-204ENST00000392003 IBTKQ9P2D0 1353 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-204ENST00000392003 FAM208AQ9UK61 1670 aaKnown RBP11.74□□□□□ -0.53
COL6A3-204ENST00000392003 CHRM1P11229 460 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-204ENST00000392003 HSP90AB4PQ58FF6 505 aa11.74□□□□□ -0.53
COL6A3-204ENST00000392003 CHPF2Q9P2E5 772 aa11.74□□□□□ -0.53
COL6A3-204ENST00000392003 MARF1Q9Y4F3 1742 aaKnown RBP11.74□□□□□ -0.53
COL6A3-204ENST00000392003 OS9Q13438 667 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-204ENST00000392003 CWC22Q9HCG8 908 aaKnown RBP11.73□□□□□ -0.53
COL6A3-204ENST00000392003 PRDM11Q9NQV5 511 aa11.73□□□□□ -0.53
COL6A3-204ENST00000392003 AXIN2Q9Y2T1 843 aa11.73□□□□□ -0.53
COL6A3-204ENST00000392003 PPP1R42Q7Z4L9 355 aa11.73□□□□□ -0.53
COL6A3-204ENST00000392003 RNF216Q9NWF9 866 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-204ENST00000392003 DBF4Q9UBU7 674 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-204ENST00000392003 NFAT5O94916 1531 aa11.73□□□□□ -0.53
COL6A3-204ENST00000392003 PI4KAP2A4QPH2 592 aa11.73□□□□□ -0.53
COL6A3-204ENST00000392003 RNMTO43148 476 aaKnown RBP11.73□□□□□ -0.53
COL6A3-204ENST00000392003 SRGAP3O43295 1099 aa11.73□□□□□ -0.53
COL6A3-204ENST00000392003 TSHZ3Q63HK5 1081 aa11.73□□□□□ -0.53
COL6A3-204ENST00000392003 PI4KAP1Q8N8J0 262 aa11.73□□□□□ -0.53
COL6A3-204ENST00000392003 SSH3Q8TE77 659 aa11.73□□□□□ -0.53
COL6A3-204ENST00000392003 ZBTB22O15209 634 aa11.72□□□□□ -0.53
COL6A3-204ENST00000392003 ESYT1Q9BSJ8 1104 aa11.72□□□□□ -0.53
COL6A3-204ENST00000392003 IL1RAPL2Q9NP60 686 aa11.72□□□□□ -0.53
COL6A3-204ENST00000392003 ANO2Q9NQ90 1003 aa11.72□□□□□ -0.53
COL6A3-204ENST00000392003 SPG7Q9UQ90 795 aa11.72□□□□□ -0.53
COL6A3-204ENST00000392003 STAP2Q9UGK3 403 aa11.72□□□□□ -0.53
COL6A3-204ENST00000392003 ZNF142P52746 1687 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-204ENST00000392003 AOX1Q06278 1338 aa11.72□□□□□ -0.53
COL6A3-204ENST00000392003 SSFA2P28290 1259 aa11.72□□□□□ -0.53
COL6A3-204ENST00000392003 KIF1BPQ96EK5 621 aa11.72□□□□□ -0.53
COL6A3-204ENST00000392003 C9orf78Q9NZ63 289 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-204ENST00000392003 MCM2P49736 904 aa11.71□□□□□ -0.53
COL6A3-204ENST00000392003 ISY1Q9ULR0 285 aaKnown RBP11.71□□□□□ -0.53
COL6A3-204ENST00000392003 KCNQ3O43525 872 aa11.71□□□□□ -0.54
COL6A3-204ENST00000392003 NEK4P51957 841 aa11.71□□□□□ -0.54
COL6A3-204ENST00000392003 CERS3Q8IU89 383 aa11.71□□□□□ -0.54
COL6A3-204ENST00000392003 NCAPD2Q15021 1401 aa11.71□□□□□ -0.54
COL6A3-204ENST00000392003 MRE11P49959 708 aa11.7□□□□□ -0.54
COL6A3-204ENST00000392003 EVA1CP58658 441 aa11.7□□□□□ -0.54
COL6A3-204ENST00000392003 SLAIN2Q9P270 581 aa11.7□□□□□ -0.54
COL6A3-204ENST00000392003 DDX58O95786 925 aaKnown RBP11.7□□□□□ -0.54
COL6A3-204ENST00000392003 ANXA1P04083 346 aa11.7□□□□□ -0.54
COL6A3-204ENST00000392003 CHMLP26374 656 aa11.7□□□□□ -0.54
COL6A3-204ENST00000392003 RHPN1Q8TCX5 695 aa11.7□□□□□ -0.54
COL6A3-204ENST00000392003 BEND3Q5T5X7 828 aa11.7□□□□□ -0.54
COL6A3-204ENST00000392003 TOM1L2Q6ZVM7 507 aa11.7□□□□□ -0.54
COL6A3-204ENST00000392003 NUTM1Q86Y26 1132 aa11.7□□□□□ -0.54
COL6A3-204ENST00000392003 SALL3Q9BXA9 1300 aa11.7□□□□□ -0.54
COL6A3-204ENST00000392003 ZNF335Q9H4Z2 1342 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-204ENST00000392003 TMED8Q6PL24 325 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-204ENST00000392003 ERBB3P21860 1342 aa11.69□□□□□ -0.54
COL6A3-204ENST00000392003 ALDH1L1O75891 902 aa11.69□□□□□ -0.54
COL6A3-204ENST00000392003 ANAPC15P60006 121 aa11.69□□□□□ -0.54
COL6A3-204ENST00000392003 POLA2Q14181 598 aa11.69□□□□□ -0.54
COL6A3-204ENST00000392003 TTC5Q8N0Z6 440 aa11.69□□□□□ -0.54
COL6A3-204ENST00000392003 STRN4Q9NRL3 753 aa11.69□□□□□ -0.54
COL6A3-204ENST00000392003 DDX49Q9Y6V7 483 aaKnown RBP11.69□□□□□ -0.54
COL6A3-204ENST00000392003 FSD2A1L4K1 749 aa11.68□□□□□ -0.54
COL6A3-204ENST00000392003 BAG4O95429 457 aaKnown RBP11.68□□□□□ -0.54
COL6A3-204ENST00000392003 NBPF7P0C2Y1 421 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-204ENST00000392003 CNTROBQ8N137 903 aa11.68□□□□□ -0.54
COL6A3-204ENST00000392003 CNKSR2Q8WXI2 1034 aa11.68□□□□□ -0.54
COL6A3-204ENST00000392003 HYPKQ9NX55 129 aa11.68□□□□□ -0.54
COL6A3-204ENST00000392003 GPATCH3Q96I76 525 aa11.68□□□□□ -0.54
COL6A3-204ENST00000392003 MAP3K2Q9Y2U5 619 aa11.68□□□□□ -0.54
COL6A3-204ENST00000392003 AIMP1Q12904 312 aaKnown RBP11.68□□□□□ -0.54
COL6A3-204ENST00000392003 KSR2Q6VAB6 950 aa11.68□□□□□ -0.54
COL6A3-204ENST00000392003 KIAA1211Q6ZU35 1233 aa11.68□□□□□ -0.54
COL6A3-204ENST00000392003 BRINP3Q76B58 766 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms