RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PALD1Q9ULE6 856 aa16.44■□□□□ 0.22
CCDC3-202ENST00000378839 SIPA1L3O60292 1781 aaPredicted RBP16.44■□□□□ 0.22
CCDC3-202ENST00000378839 CHMLP26374 656 aa16.44■□□□□ 0.22
CCDC3-202ENST00000378839 ESYT1Q9BSJ8 1104 aa16.44■□□□□ 0.22
CCDC3-202ENST00000378839 AK9Q5TCS8 1911 aa16.44■□□□□ 0.22
CCDC3-202ENST00000378839 ALS2Q96Q42 1657 aa16.44■□□□□ 0.22
CCDC3-202ENST00000378839 FSD2A1L4K1 749 aa16.44■□□□□ 0.22
CCDC3-202ENST00000378839 STRCP1A6NGW2 1772 aa16.44■□□□□ 0.22
CCDC3-202ENST00000378839 ERBB3P21860 1342 aa16.43■□□□□ 0.22
CCDC3-202ENST00000378839 SRGAP3O43295 1099 aa16.43■□□□□ 0.22
CCDC3-202ENST00000378839 MAP4K4O95819 1239 aaPredicted RBP16.43■□□□□ 0.22
CCDC3-202ENST00000378839 HSP90AA1P07900 732 aaKnown RBP16.43■□□□□ 0.22
CCDC3-202ENST00000378839 C1orf141Q5JVX7 400 aa16.43■□□□□ 0.22
CCDC3-202ENST00000378839 ZGPATQ8N5A5 531 aaKnown RBP16.43■□□□□ 0.22
CCDC3-202ENST00000378839 RILPL2Q969X0 211 aa16.43■□□□□ 0.22
CCDC3-202ENST00000378839 SURF6O75683 361 aaKnown RBP16.42■□□□□ 0.22
CCDC3-202ENST00000378839 CASC1Q6TDU7 716 aa16.42■□□□□ 0.22
CCDC3-202ENST00000378839 C19orf44Q9H6X5 657 aa16.42■□□□□ 0.22
CCDC3-202ENST00000378839 PI4K2BQ8TCG2 481 aa16.42■□□□□ 0.22
CCDC3-202ENST00000378839 CABLES1Q8TDN4 633 aa16.42■□□□□ 0.22
CCDC3-202ENST00000378839 ADAMTS7Q9UKP4 1686 aa16.42■□□□□ 0.22
CCDC3-202ENST00000378839 REC8O95072 547 aa16.42■□□□□ 0.22
CCDC3-202ENST00000378839 MAP3K2Q9Y2U5 619 aa16.42■□□□□ 0.22
CCDC3-202ENST00000378839 MST1RQ04912 1400 aa16.41■□□□□ 0.22
CCDC3-202ENST00000378839 PDIA6Q15084 440 aa16.41■□□□□ 0.22
CCDC3-202ENST00000378839 CWF19L2Q2TBE0 894 aaKnown RBP16.41■□□□□ 0.22
CCDC3-202ENST00000378839 RHPN1Q8TCX5 695 aa16.41■□□□□ 0.22
CCDC3-202ENST00000378839 XRCC6P12956 609 aaKnown RBP eCLIP16.41■□□□□ 0.22
CCDC3-202ENST00000378839 SLC39A6Q13433 755 aa16.41■□□□□ 0.22
CCDC3-202ENST00000378839 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.41■□□□□ 0.22
CCDC3-202ENST00000378839 TRIM6-TRIM34B2RNG4 842 aa16.4■□□□□ 0.22
CCDC3-202ENST00000378839 KDM6AO15550 1401 aaPredicted RBP16.4■□□□□ 0.22
CCDC3-202ENST00000378839 HSPA2P54652 639 aa16.4■□□□□ 0.22
CCDC3-202ENST00000378839 DBF4Q9UBU7 674 aaPredicted RBP16.4■□□□□ 0.22
CCDC3-202ENST00000378839 DDX11L8A8MPP1 907 aa16.4■□□□□ 0.22
CCDC3-202ENST00000378839 STRCQ7RTU9 1775 aa16.4■□□□□ 0.22
CCDC3-202ENST00000378839 OVOS2A0A0G2JMS6 1433 aa16.4■□□□□ 0.22
CCDC3-202ENST00000378839 CYP2E1P05181 493 aaPredicted RBP16.39■□□□□ 0.21
CCDC3-202ENST00000378839 KAZALD1Q96I82 304 aa16.39■□□□□ 0.21
CCDC3-202ENST00000378839 PANK2Q9BZ23 570 aa16.39■□□□□ 0.21
CCDC3-202ENST00000378839 KIF1AQ12756 1690 aa16.39■□□□□ 0.21
CCDC3-202ENST00000378839 UBE2Q2Q8WVN8 375 aa16.39■□□□□ 0.21
CCDC3-202ENST00000378839 TMEM94Q12767 1356 aa16.39■□□□□ 0.21
CCDC3-202ENST00000378839 MEGF6O75095 1541 aa16.38■□□□□ 0.21
CCDC3-202ENST00000378839 CHAMP1Q96JM3 812 aa16.38■□□□□ 0.21
CCDC3-202ENST00000378839 COL18A1P39060 1754 aa16.38■□□□□ 0.21
CCDC3-202ENST00000378839 ZDHHC9Q9Y397 364 aa16.38■□□□□ 0.21
CCDC3-202ENST00000378839 CRYBG1Q9Y4K1 1723 aa16.37■□□□□ 0.21
CCDC3-202ENST00000378839 CLEC17AQ6ZS10 378 aa16.37■□□□□ 0.21
CCDC3-202ENST00000378839 PA2G4Q9UQ80 394 aaKnown RBP16.37■□□□□ 0.21
CCDC3-202ENST00000378839 C5P01031 1676 aa16.37■□□□□ 0.21
CCDC3-202ENST00000378839 RAB11FIP3O75154 756 aa16.37■□□□□ 0.21
CCDC3-202ENST00000378839 KSR2Q6VAB6 950 aa16.37■□□□□ 0.21
CCDC3-202ENST00000378839 BAG4O95429 457 aaKnown RBP16.36■□□□□ 0.21
CCDC3-202ENST00000378839 CHRNA2Q15822 529 aa16.36■□□□□ 0.21
CCDC3-202ENST00000378839 GAS2L3Q86XJ1 694 aa16.36■□□□□ 0.21
CCDC3-202ENST00000378839 ANO2Q9NQ90 1003 aa16.36■□□□□ 0.21
CCDC3-202ENST00000378839 NLRP2Q9NX02 1062 aa16.36■□□□□ 0.21
CCDC3-202ENST00000378839 AOX1Q06278 1338 aa16.36■□□□□ 0.21
CCDC3-202ENST00000378839 NEK4P51957 841 aa16.36■□□□□ 0.21
CCDC3-202ENST00000378839 NFATC2IPQ8NCF5 419 aa16.36■□□□□ 0.21
CCDC3-202ENST00000378839 AIMP1Q12904 312 aaKnown RBP16.35■□□□□ 0.21
CCDC3-202ENST00000378839 GBP4Q96PP9 640 aa16.35■□□□□ 0.21
CCDC3-202ENST00000378839 GOLGA6L3A6NEY3 463 aa16.35■□□□□ 0.21
CCDC3-202ENST00000378839 PHKG2P15735 406 aa16.35■□□□□ 0.21
CCDC3-202ENST00000378839 MTX1Q13505 466 aa16.35■□□□□ 0.21
CCDC3-202ENST00000378839 KIF1BPQ96EK5 621 aa16.35■□□□□ 0.21
CCDC3-202ENST00000378839 NPHP3Q7Z494 1330 aa16.35■□□□□ 0.21
CCDC3-202ENST00000378839 ZNF790Q6PG37 636 aa16.34■□□□□ 0.21
CCDC3-202ENST00000378839 ST18O60284 1047 aa16.34■□□□□ 0.21
CCDC3-202ENST00000378839 IGKV5-2P06315 115 aa16.34■□□□□ 0.21
CCDC3-202ENST00000378839 PIP4K2AP48426 406 aaPredicted RBP16.34■□□□□ 0.21
CCDC3-202ENST00000378839 SUCLG2Q96I99 432 aa16.34■□□□□ 0.21
CCDC3-202ENST00000378839 SLC52A2Q9HAB3 445 aa16.34■□□□□ 0.21
CCDC3-202ENST00000378839 TMX3Q96JJ7 454 aa16.34■□□□□ 0.21
CCDC3-202ENST00000378839 SCN11AQ9UI33 1791 aa16.33■□□□□ 0.21
CCDC3-202ENST00000378839 CYP27B1O15528 508 aa16.33■□□□□ 0.2
CCDC3-202ENST00000378839 ATF3P18847 181 aa16.32■□□□□ 0.2
CCDC3-202ENST00000378839 LRP10Q7Z4F1 713 aa16.32■□□□□ 0.2
CCDC3-202ENST00000378839 DDX21Q9NR30 783 aaKnown RBP eCLIP16.32■□□□□ 0.2
CCDC3-202ENST00000378839 C9orf78Q9NZ63 289 aaPredicted RBP16.32■□□□□ 0.2
CCDC3-202ENST00000378839 ALDH1L1O75891 902 aa16.32■□□□□ 0.2
CCDC3-202ENST00000378839 IL17RAQ96F46 866 aa16.32■□□□□ 0.2
CCDC3-202ENST00000378839 ZNF496Q96IT1 587 aaPredicted RBP16.32■□□□□ 0.2
CCDC3-202ENST00000378839 UPF3BQ9BZI7 483 aaKnown RBP16.32■□□□□ 0.2
CCDC3-202ENST00000378839 MYL6BP14649 208 aa16.32■□□□□ 0.2
CCDC3-202ENST00000378839 L1TD1Q5T7N2 865 aaKnown RBP16.32■□□□□ 0.2
CCDC3-202ENST00000378839 NOL8Q76FK4 1167 aaKnown RBP16.32■□□□□ 0.2
CCDC3-202ENST00000378839 RAPGEF4Q8WZA2 1011 aa16.32■□□□□ 0.2
CCDC3-202ENST00000378839 HYPKQ9NX55 129 aa16.32■□□□□ 0.2
CCDC3-202ENST00000378839 BICC1Q9H694 974 aaKnown RBP16.31■□□□□ 0.2
CCDC3-202ENST00000378839 USP42Q9H9J4 1324 aaKnown RBP16.31■□□□□ 0.2
CCDC3-202ENST00000378839 USP16Q9Y5T5 823 aa16.31■□□□□ 0.2
CCDC3-202ENST00000378839 UTYO14607 1347 aa16.31■□□□□ 0.2
CCDC3-202ENST00000378839 SGSM2O43147 1006 aa16.3■□□□□ 0.2
CCDC3-202ENST00000378839 SASH1O94885 1247 aa16.3■□□□□ 0.2
CCDC3-202ENST00000378839 EPHA10Q5JZY3 1008 aa16.3■□□□□ 0.2
CCDC3-202ENST00000378839 LINS1Q8NG48 757 aa16.3■□□□□ 0.2
CCDC3-202ENST00000378839 KLHDC4Q8TBB5 520 aa16.3■□□□□ 0.2
CCDC3-202ENST00000378839 LSG1Q9H089 658 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms