RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CASTP20810 708 aaKnown RBP5.35□□□□□ -1.55
SCN1A-202ENST00000375405 SKIV2LQ15477 1246 aaKnown RBP5.35□□□□□ -1.55
SCN1A-202ENST00000375405 TAOK3Q9H2K8 898 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 DAPK3O43293 454 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 VIMP08670 466 aaKnown RBP5.35□□□□□ -1.55
SCN1A-202ENST00000375405 ATICP31939 592 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 EIF5P55010 431 aaKnown RBP5.35□□□□□ -1.55
SCN1A-202ENST00000375405 PDCD2Q16342 344 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-202ENST00000375405 RAI14Q9P0K7 980 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 ESYT2A0FGR8 921 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 PPFIA2O75334 1257 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 CASQ1P31415 396 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 NCBP1Q09161 790 aaKnown RBP5.35□□□□□ -1.55
SCN1A-202ENST00000375405 CCDC158Q5M9N0 1113 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 ZNF569Q5MCW4 686 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 CTR9Q6PD62 1173 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 CCDC69A6NI79 296 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 PPFIA3O75145 1194 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 NLRP5P59047 1200 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 WDR66Q8TBY9 1149 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 SYTL2Q9HCH5 934 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 TXNDC16Q9P2K2 825 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 PDE3BQ13370 1112 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 TBCCQ15814 346 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 TTC39AQ5SRH9 613 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 ZNF397Q8NF99 534 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-202ENST00000375405 TRAIPQ9BWF2 469 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 GBP3Q9H0R5 595 aa5.35□□□□□ -1.55
SCN1A-202ENST00000375405 MCM10Q7L590 875 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 GOLGA6AQ9NYA3 693 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 TERF2IPQ9NYB0 399 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 KINO60870 393 aaKnown RBP5.34□□□□□ -1.55
SCN1A-202ENST00000375405 PRKG1Q13976 671 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 PPP2R5DQ14738 602 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 INAQ16352 499 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 MICALCLQ6ZW33 695 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-202ENST00000375405 SPC24Q8NBT2 197 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 PIP4K2AP48426 406 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-202ENST00000375405 LUZP1Q86V48 1076 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 TBC1D31Q96DN5 1066 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 CGNQ9P2M7 1197 aaKnown RBP5.34□□□□□ -1.55
SCN1A-202ENST00000375405 GIPC1O14908 333 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 ME1P48163 572 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 IRX3P78415 501 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-202ENST00000375405 SYCP3Q8IZU3 236 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 AFAP1Q8N556 730 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 ZMAT2Q96NC0 199 aaKnown RBP5.34□□□□□ -1.55
SCN1A-202ENST00000375405 LRP2BPQ9P2M1 347 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 SEC63Q9UGP8 760 aaKnown RBP5.34□□□□□ -1.55
SCN1A-202ENST00000375405 STMN1P16949 149 aa5.34□□□□□ -1.55
SCN1A-202ENST00000375405 NR1H4Q96RI1 486 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-202ENST00000375405 MAP4K4O95819 1239 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-202ENST00000375405 CPLX4Q7Z7G2 160 aa5.34□□□□□ -1.56
SCN1A-202ENST00000375405 CUL5Q93034 780 aa5.34□□□□□ -1.56
SCN1A-202ENST00000375405 SYNDIG1Q9H7V2 258 aa5.34□□□□□ -1.56
SCN1A-202ENST00000375405 GIMAP4Q9NUV9 329 aa5.34□□□□□ -1.56
SCN1A-202ENST00000375405 BRPF3Q9ULD4 1205 aa5.34□□□□□ -1.56
SCN1A-202ENST00000375405 IRX5P78411 483 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-202ENST00000375405 CFAP157Q5JU67 520 aa5.34□□□□□ -1.56
SCN1A-202ENST00000375405 FBXW10Q5XX13 1052 aa5.34□□□□□ -1.56
SCN1A-202ENST00000375405 ANLNQ9NQW6 1124 aa5.34□□□□□ -1.56
SCN1A-202ENST00000375405 RNF34Q969K3 372 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 SLC7A5P2Q9GIP4 190 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 ZNF408Q9H9D4 720 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 OLA1Q9NTK5 396 aaKnown RBP5.33□□□□□ -1.56
SCN1A-202ENST00000375405 PLCB4Q15147 1175 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 CACNA2D4Q7Z3S7 1137 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 PPFIBP2Q8ND30 876 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 FAM114A2Q9NRY5 505 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 KTN1Q86UP2 1357 aaKnown RBP5.33□□□□□ -1.56
SCN1A-202ENST00000375405 LMOD1P29536 600 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-202ENST00000375405 NOP14P78316 857 aaKnown RBP5.33□□□□□ -1.56
SCN1A-202ENST00000375405 HS1BP3Q53T59 392 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 RAB3IPQ96QF0 476 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-202ENST00000375405 PALM3A6NDB9 673 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-202ENST00000375405 MPNDQ8N594 471 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 DDX27Q96GQ7 796 aaKnown RBP5.33□□□□□ -1.56
SCN1A-202ENST00000375405 RABGAP1Q9Y3P9 1069 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 FAM95CA0A1B0GW59 222 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 PHACTR2O75167 634 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 GJC1P36383 396 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 ANO6Q4KMQ2 910 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 EXOC6Q8TAG9 804 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 RAPGEF4Q8WZA2 1011 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 MPHOSPH8Q99549 860 aa5.33□□□□□ -1.56
SCN1A-202ENST00000375405 HMGB1P1B2RPK0 211 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-202ENST00000375405 MAP3K7CLP57077 242 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 SKA2Q8WVK7 121 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-202ENST00000375405 NUP62CLQ9H1M0 184 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 ZNF853P0CG23 659 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 POLD1P28340 1107 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 FOXD4Q12950 439 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-202ENST00000375405 CCDC57Q2TAC2 916 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 ASCC2Q9H1I8 757 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-202ENST00000375405 SUDS3Q9H7L9 328 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-202ENST00000375405 ANKIB1Q9P2G1 1089 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 LIMCH1Q9UPQ0 1083 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 GOLGA6CA6NDK9 693 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 CBFA2T2O43439 604 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms