RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 KDM4AO75164 1064 aa16.46■□□□□ 0.23
USP49-201ENST00000373006 GNAI3P08754 354 aa16.46■□□□□ 0.23
USP49-201ENST00000373006 PRIMPOLQ96LW4 560 aa16.46■□□□□ 0.23
USP49-201ENST00000373006 AP5Z1O43299 807 aa16.46■□□□□ 0.22
USP49-201ENST00000373006 STAP2Q9UGK3 403 aa16.45■□□□□ 0.22
USP49-201ENST00000373006 SPG7Q9UQ90 795 aa16.45■□□□□ 0.22
USP49-201ENST00000373006 SNX14Q9Y5W7 946 aa16.45■□□□□ 0.22
USP49-201ENST00000373006 METP08581 1390 aa16.45■□□□□ 0.22
USP49-201ENST00000373006 UBE2HP62256 183 aa16.45■□□□□ 0.22
USP49-201ENST00000373006 HMGN5P82970 282 aaKnown RBP16.45■□□□□ 0.22
USP49-201ENST00000373006 CHMP3Q9Y3E7 222 aa16.45■□□□□ 0.22
USP49-201ENST00000373006 KIF3AQ9Y496 699 aa16.45■□□□□ 0.22
USP49-201ENST00000373006 PRR36Q9H6K5 1346 aa16.45■□□□□ 0.22
USP49-201ENST00000373006 RUFY3Q7L099 469 aa16.44■□□□□ 0.22
USP49-201ENST00000373006 MAP3K19Q56UN5 1328 aa16.44■□□□□ 0.22
USP49-201ENST00000373006 PPP4R3BQ5MIZ7 849 aa16.44■□□□□ 0.22
USP49-201ENST00000373006 DDX54Q8TDD1 881 aaKnown RBP16.44■□□□□ 0.22
USP49-201ENST00000373006 SMC3Q9UQE7 1217 aa16.44■□□□□ 0.22
USP49-201ENST00000373006 PREX1Q8TCU6 1659 aa16.44■□□□□ 0.22
USP49-201ENST00000373006 SURF6O75683 361 aaKnown RBP16.44■□□□□ 0.22
USP49-201ENST00000373006 DNM1Q05193 864 aaKnown RBP16.44■□□□□ 0.22
USP49-201ENST00000373006 CWC27Q6UX04 472 aaKnown RBP16.44■□□□□ 0.22
USP49-201ENST00000373006 CGNQ9P2M7 1197 aaKnown RBP16.44■□□□□ 0.22
USP49-201ENST00000373006 LARGE1O95461 756 aa16.43■□□□□ 0.22
USP49-201ENST00000373006 PYCARDQ9ULZ3 195 aa16.43■□□□□ 0.22
USP49-201ENST00000373006 F13A1P00488 732 aa16.43■□□□□ 0.22
USP49-201ENST00000373006 TMEM87AQ8NBN3 555 aa16.43■□□□□ 0.22
USP49-201ENST00000373006 USP44Q9H0E7 712 aa16.43■□□□□ 0.22
USP49-201ENST00000373006 ATP2B3Q16720 1220 aa16.42■□□□□ 0.22
USP49-201ENST00000373006 TTC21BQ7Z4L5 1316 aa16.42■□□□□ 0.22
USP49-201ENST00000373006 CCDC83Q8IWF9 413 aa16.42■□□□□ 0.22
USP49-201ENST00000373006 BCL2L12Q9HB09 334 aa16.42■□□□□ 0.22
USP49-201ENST00000373006 LIMCH1Q9UPQ0 1083 aa16.42■□□□□ 0.22
USP49-201ENST00000373006 LETM1O95202 739 aaPredicted RBP16.42■□□□□ 0.22
USP49-201ENST00000373006 UBTFL1P0CB47 393 aaPredicted RBP16.42■□□□□ 0.22
USP49-201ENST00000373006 KCNF1Q9H3M0 494 aa16.42■□□□□ 0.22
USP49-201ENST00000373006 SSH2Q76I76 1423 aa16.41■□□□□ 0.22
USP49-201ENST00000373006 SGSM2O43147 1006 aa16.41■□□□□ 0.22
USP49-201ENST00000373006 ZSCAN20P17040 1043 aaPredicted RBP16.41■□□□□ 0.22
USP49-201ENST00000373006 CASTP20810 708 aaKnown RBP16.41■□□□□ 0.22
USP49-201ENST00000373006 TTC14Q96N46 770 aa16.41■□□□□ 0.22
USP49-201ENST00000373006 SPTLC3Q9NUV7 552 aa16.41■□□□□ 0.22
USP49-201ENST00000373006 GTF2F1P35269 517 aaKnown RBP eCLIP16.4■□□□□ 0.227e-8■■■■■ 33.1
USP49-201ENST00000373006 CCDC30Q5VVM6 783 aa16.4■□□□□ 0.22
USP49-201ENST00000373006 PPP1R42Q7Z4L9 355 aa16.4■□□□□ 0.22
USP49-201ENST00000373006 NAP1L2Q9ULW6 460 aaPredicted RBP16.4■□□□□ 0.22
USP49-201ENST00000373006 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.4■□□□□ 0.22
USP49-201ENST00000373006 ACEP12821 1306 aa16.4■□□□□ 0.22
USP49-201ENST00000373006 VPS37CA5D8V6 355 aaPredicted RBP16.4■□□□□ 0.22
USP49-201ENST00000373006 CDK11BP21127 795 aaKnown RBP16.4■□□□□ 0.22
USP49-201ENST00000373006 GJB2P29033 226 aa16.4■□□□□ 0.22
USP49-201ENST00000373006 RAD50Q92878 1312 aa16.4■□□□□ 0.22
USP49-201ENST00000373006 CEBPAP49715 358 aaPredicted RBP16.4■□□□□ 0.22
USP49-201ENST00000373006 NUTM2GQ5VZR2 741 aa16.4■□□□□ 0.22
USP49-201ENST00000373006 LSG1Q9H089 658 aaKnown RBP16.4■□□□□ 0.22
USP49-201ENST00000373006 NEO1Q92859 1461 aa16.39■□□□□ 0.22
USP49-201ENST00000373006 CAMK4Q16566 473 aa16.39■□□□□ 0.21
USP49-201ENST00000373006 KIAA1524Q8TCG1 905 aa16.39■□□□□ 0.21
USP49-201ENST00000373006 PI4K2BQ8TCG2 481 aa16.39■□□□□ 0.21
USP49-201ENST00000373006 FUCA2Q9BTY2 467 aa16.39■□□□□ 0.21
USP49-201ENST00000373006 PHAXQ9H814 394 aaKnown RBP16.39■□□□□ 0.21
USP49-201ENST00000373006 RIOK3O14730 519 aaKnown RBP16.39■□□□□ 0.21
USP49-201ENST00000373006 GTF2E1P29083 439 aaPredicted RBP16.39■□□□□ 0.21
USP49-201ENST00000373006 RHPN1Q8TCX5 695 aa16.39■□□□□ 0.21
USP49-201ENST00000373006 IL17RAQ96F46 866 aa16.39■□□□□ 0.21
USP49-201ENST00000373006 SOS1Q07889 1333 aaPredicted RBP16.38■□□□□ 0.21
USP49-201ENST00000373006 PAXIP1Q6ZW49 1069 aaPredicted RBP16.38■□□□□ 0.21
USP49-201ENST00000373006 ZNF771Q7L3S4 317 aaPredicted RBP16.38■□□□□ 0.21
USP49-201ENST00000373006 ADCK5Q3MIX3 580 aa16.38■□□□□ 0.21
USP49-201ENST00000373006 FAM173BQ6P4H8 233 aa16.38■□□□□ 0.21
USP49-201ENST00000373006 LTV1Q96GA3 475 aaPredicted RBP16.38■□□□□ 0.21
USP49-201ENST00000373006 SLC26A8Q96RN1 970 aa16.38■□□□□ 0.21
USP49-201ENST00000373006 ATP6V1DQ9Y5K8 247 aa16.38■□□□□ 0.21
USP49-201ENST00000373006 DLC1Q96QB1 1528 aa16.38■□□□□ 0.21
USP49-201ENST00000373006 SRGAP3O43295 1099 aa16.38■□□□□ 0.21
USP49-201ENST00000373006 DMTNQ08495 405 aa16.38■□□□□ 0.21
USP49-201ENST00000373006 FERMT3Q86UX7 667 aa16.38■□□□□ 0.21
USP49-201ENST00000373006 NECAB1Q8N987 351 aa16.37■□□□□ 0.21
USP49-201ENST00000373006 HYPKQ9NX55 129 aa16.37■□□□□ 0.21
USP49-201ENST00000373006 MTMR6Q9Y217 621 aa16.37■□□□□ 0.21
USP49-201ENST00000373006 A2ML1A8K2U0 1454 aa16.37■□□□□ 0.21
USP49-201ENST00000373006 PDCL2Q8N4E4 241 aa16.36■□□□□ 0.21
USP49-201ENST00000373006 SSH3Q8TE77 659 aa16.36■□□□□ 0.21
USP49-201ENST00000373006 JAKMIP1Q96N16 626 aaKnown RBP16.36■□□□□ 0.21
USP49-201ENST00000373006 EYA1Q99502 592 aa16.36■□□□□ 0.21
USP49-201ENST00000373006 PRPF40BQ6NWY9 871 aaKnown RBP16.36■□□□□ 0.21
USP49-201ENST00000373006 CNTROBQ8N137 903 aa16.36■□□□□ 0.21
USP49-201ENST00000373006 PTGS1P23219 599 aa16.36■□□□□ 0.21
USP49-201ENST00000373006 PTH1RQ03431 593 aa16.36■□□□□ 0.21
USP49-201ENST00000373006 CHAF1AQ13111 956 aaPredicted RBP16.36■□□□□ 0.21
USP49-201ENST00000373006 NBPF7P0C2Y1 421 aaPredicted RBP16.35■□□□□ 0.21
USP49-201ENST00000373006 U2AF2P26368 475 aaKnown RBP eCLIP16.35■□□□□ 0.21
USP49-201ENST00000373006 CHMP4AQ9BY43 222 aa16.35■□□□□ 0.21
USP49-201ENST00000373006 PDRG1Q9NUG6 133 aa16.35■□□□□ 0.21
USP49-201ENST00000373006 EIF2S2P20042 333 aaKnown RBP16.35■□□□□ 0.21
USP49-201ENST00000373006 LUZP1Q86V48 1076 aa16.35■□□□□ 0.21
USP49-201ENST00000373006 AMPHP49418 695 aa16.34■□□□□ 0.21
USP49-201ENST00000373006 CKAP2LQ8IYA6 745 aa16.34■□□□□ 0.21
USP49-201ENST00000373006 TRERF1Q96PN7 1200 aa16.34■□□□□ 0.21
USP49-201ENST00000373006 CCDC192P0DO97 292 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms