RNA–Protein interactions for RNA: ENST00000372232.7

ATG4A-203, Transcript of autophagy related 4A cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4A, Length 2,315 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-203ENST00000372232 ESF1Q9H501 851 aaKnown RBP10.83□□□□□ -0.68
ATG4A-203ENST00000372232 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.82□□□□□ -0.68
ATG4A-203ENST00000372232 ADAMTS19Q8TE59 1207 aa10.82□□□□□ -0.68
ATG4A-203ENST00000372232 TIGD1Q96MW7 591 aa10.82□□□□□ -0.68
ATG4A-203ENST00000372232 AMOTL2Q9Y2J4 779 aa10.82□□□□□ -0.68
ATG4A-203ENST00000372232 HSP90AB1P08238 724 aaKnown RBP10.81□□□□□ -0.68
ATG4A-203ENST00000372232 HMGN5P82970 282 aaKnown RBP10.81□□□□□ -0.68
ATG4A-203ENST00000372232 TMC2Q8TDI7 906 aa10.81□□□□□ -0.68
ATG4A-203ENST00000372232 FAM217BQ9NTX9 383 aaPredicted RBP10.81□□□□□ -0.68
ATG4A-203ENST00000372232 NCOA3Q9Y6Q9 1424 aa10.8□□□□□ -0.68
ATG4A-203ENST00000372232 CAPN2P17655 700 aa10.8□□□□□ -0.68
ATG4A-203ENST00000372232 BANK1Q8NDB2 785 aa10.8□□□□□ -0.68
ATG4A-203ENST00000372232 LIMD1Q9UGP4 676 aa10.8□□□□□ -0.68
ATG4A-203ENST00000372232 KIF3AQ9Y496 699 aa10.8□□□□□ -0.68
ATG4A-203ENST00000372232 HMGB1P09429 215 aaKnown RBP10.8□□□□□ -0.68
ATG4A-203ENST00000372232 DDIT3P35638 169 aa10.8□□□□□ -0.68
ATG4A-203ENST00000372232 PDE3AQ14432 1141 aa10.8□□□□□ -0.68
ATG4A-203ENST00000372232 SND1Q7KZF4 910 aaKnown RBP eCLIP10.8□□□□□ -0.68
ATG4A-203ENST00000372232 FEZ1Q99689 392 aa10.8□□□□□ -0.68
ATG4A-203ENST00000372232 MAPK8IP3Q9UPT6 1336 aa10.8□□□□□ -0.68
ATG4A-203ENST00000372232 METP08581 1390 aa10.8□□□□□ -0.68
ATG4A-203ENST00000372232 SETD1AO15047 1707 aaKnown RBP10.79□□□□□ -0.68
ATG4A-203ENST00000372232 COL3A1P02461 1466 aaPredicted RBP10.79□□□□□ -0.68
ATG4A-203ENST00000372232 PLEKHF1Q96S99 279 aa10.79□□□□□ -0.68
ATG4A-203ENST00000372232 EFCC1Q9HA90 598 aa10.79□□□□□ -0.68
ATG4A-203ENST00000372232 UPF2Q9HAU5 1272 aaKnown RBP10.79□□□□□ -0.68
ATG4A-203ENST00000372232 FER1L4A9Z1Z3 1794 aa10.79□□□□□ -0.68
ATG4A-203ENST00000372232 PATL2C9JE40 543 aaKnown RBP10.79□□□□□ -0.68
ATG4A-203ENST00000372232 APPP05067 770 aa10.79□□□□□ -0.68
ATG4A-203ENST00000372232 HDGFP51858 240 aaKnown RBP10.79□□□□□ -0.68
ATG4A-203ENST00000372232 FAM193AP78312 1265 aa10.79□□□□□ -0.68
ATG4A-203ENST00000372232 PNPLA6Q8IY17 1366 aa10.79□□□□□ -0.68
ATG4A-203ENST00000372232 NRXN3Q9Y4C0 1643 aa10.78□□□□□ -0.68
ATG4A-203ENST00000372232 RIMS1Q86UR5 1692 aaKnown RBP10.78□□□□□ -0.68
ATG4A-203ENST00000372232 TRIM6-TRIM34B2RNG4 842 aa10.78□□□□□ -0.68
ATG4A-203ENST00000372232 U2SURPO15042 1029 aaKnown RBP10.78□□□□□ -0.68
ATG4A-203ENST00000372232 RARSP54136 660 aaKnown RBP10.78□□□□□ -0.68
ATG4A-203ENST00000372232 GBP4Q96PP9 640 aa10.78□□□□□ -0.68
ATG4A-203ENST00000372232 TRIM34Q9BYJ4 488 aa10.78□□□□□ -0.68
ATG4A-203ENST00000372232 NPDC1Q9NQX5 325 aaPredicted RBP10.78□□□□□ -0.68
ATG4A-203ENST00000372232 TNRQ92752 1358 aa10.78□□□□□ -0.68
ATG4A-203ENST00000372232 ATP7BP35670 1465 aa10.78□□□□□ -0.68
ATG4A-203ENST00000372232 C2orf72A6NCS6 295 aa10.78□□□□□ -0.68
ATG4A-203ENST00000372232 WASLO00401 505 aaPredicted RBP10.78□□□□□ -0.68
ATG4A-203ENST00000372232 ADGRB2O60241 1585 aa10.77□□□□□ -0.68
ATG4A-203ENST00000372232 SLFN14P0C7P3 912 aa10.77□□□□□ -0.69
ATG4A-203ENST00000372232 TXNDC2Q86VQ3 553 aa10.77□□□□□ -0.69
ATG4A-203ENST00000372232 PDCL2Q8N4E4 241 aa10.77□□□□□ -0.69
ATG4A-203ENST00000372232 SIRT1Q96EB6 747 aa10.77□□□□□ -0.69
ATG4A-203ENST00000372232 CCDC39Q9UFE4 941 aa10.77□□□□□ -0.69
ATG4A-203ENST00000372232 USTQ9Y2C2 406 aa10.77□□□□□ -0.69
ATG4A-203ENST00000372232 ANKRD26Q9UPS8 1709 aa10.77□□□□□ -0.69
ATG4A-203ENST00000372232 DIAPH1O60610 1272 aaKnown RBP10.76□□□□□ -0.69
ATG4A-203ENST00000372232 PTMAP06454 111 aaKnown RBP10.76□□□□□ -0.69
ATG4A-203ENST00000372232 CSB-PGBD3P0DP91 1061 aa10.76□□□□□ -0.69
ATG4A-203ENST00000372232 ZNF445P59923 1031 aa10.76□□□□□ -0.69
ATG4A-203ENST00000372232 GRIPAP1Q4V328 841 aa10.76□□□□□ -0.69
ATG4A-203ENST00000372232 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.76□□□□□ -0.69
ATG4A-203ENST00000372232 MICALL2Q8IY33 904 aa10.76□□□□□ -0.69
ATG4A-203ENST00000372232 OGFRQ9NZT2 677 aa10.76□□□□□ -0.69
ATG4A-203ENST00000372232 TMPOP42166 694 aaKnown RBP10.76□□□□□ -0.69
ATG4A-203ENST00000372232 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.76□□□□□ -0.69
ATG4A-203ENST00000372232 CALCOCO1Q9P1Z2 691 aa10.76□□□□□ -0.69
ATG4A-203ENST00000372232 CPSF1Q10570 1443 aaKnown RBP10.76□□□□□ -0.69
ATG4A-203ENST00000372232 FAM135BQ49AJ0 1406 aa10.76□□□□□ -0.69
ATG4A-203ENST00000372232 TMEM2Q9UHN6 1383 aa10.75□□□□□ -0.69
ATG4A-203ENST00000372232 PTGER2P43116 358 aa10.75□□□□□ -0.69
ATG4A-203ENST00000372232 PANK1Q8TE04 598 aa10.75□□□□□ -0.69
ATG4A-203ENST00000372232 JARID2Q92833 1246 aaPredicted RBP10.75□□□□□ -0.69
ATG4A-203ENST00000372232 TECPR2O15040 1411 aa10.75□□□□□ -0.69
ATG4A-203ENST00000372232 HDGFL1Q5TGJ6 251 aa10.75□□□□□ -0.69
ATG4A-203ENST00000372232 ANKRD7Q92527 254 aa10.75□□□□□ -0.69
ATG4A-203ENST00000372232 TNPO1Q92973 898 aaKnown RBP10.75□□□□□ -0.69
ATG4A-203ENST00000372232 BCL2L12Q9HB09 334 aa10.75□□□□□ -0.69
ATG4A-203ENST00000372232 POLKQ9UBT6 870 aa10.75□□□□□ -0.69
ATG4A-203ENST00000372232 TRIM35Q9UPQ4 493 aa10.75□□□□□ -0.69
ATG4A-203ENST00000372232 FAM177A1Q8N128 213 aaPredicted RBP10.74□□□□□ -0.69
ATG4A-203ENST00000372232 TSC1Q92574 1164 aa10.74□□□□□ -0.69
ATG4A-203ENST00000372232 PHF12Q96QT6 1004 aa10.74□□□□□ -0.69
ATG4A-203ENST00000372232 PPIP5K1Q6PFW1 1433 aa10.74□□□□□ -0.69
ATG4A-203ENST00000372232 CHMP4CQ96CF2 233 aa10.74□□□□□ -0.69
ATG4A-203ENST00000372232 NUDT16Q96DE0 195 aaKnown RBP10.74□□□□□ -0.69
ATG4A-203ENST00000372232 EDC4Q6P2E9 1401 aaKnown RBP10.74□□□□□ -0.69
ATG4A-203ENST00000372232 U2AF2P26368 475 aaKnown RBP eCLIP10.73□□□□□ -0.692e-7■□□□□ 9.2
ATG4A-203ENST00000372232 KIAA2012Q0VF49 1180 aa10.73□□□□□ -0.69
ATG4A-203ENST00000372232 RAB3GAP1Q15042 981 aa10.73□□□□□ -0.69
ATG4A-203ENST00000372232 KLHL40Q2TBA0 621 aa10.73□□□□□ -0.69
ATG4A-203ENST00000372232 CT47B1P0C2W7 299 aaPredicted RBP10.73□□□□□ -0.69
ATG4A-203ENST00000372232 PRKAR2AP13861 404 aaKnown RBP10.73□□□□□ -0.69
ATG4A-203ENST00000372232 FBLN1P23142 703 aa10.73□□□□□ -0.69
ATG4A-203ENST00000372232 KIF20BQ96Q89 1820 aa10.72□□□□□ -0.69
ATG4A-203ENST00000372232 IGHDP01880 384 aa10.72□□□□□ -0.69
ATG4A-203ENST00000372232 ILDR1Q86SU0 546 aaPredicted RBP10.72□□□□□ -0.69
ATG4A-203ENST00000372232 TSR2Q969E8 191 aaKnown RBP10.72□□□□□ -0.69
ATG4A-203ENST00000372232 CARD10Q9BWT7 1032 aa10.72□□□□□ -0.69
ATG4A-203ENST00000372232 BCL2L13Q9BXK5 485 aa10.72□□□□□ -0.69
ATG4A-203ENST00000372232 IL16Q14005 1332 aa10.72□□□□□ -0.69
ATG4A-203ENST00000372232 CEBPAP49715 358 aaPredicted RBP10.72□□□□□ -0.69
ATG4A-203ENST00000372232 NME9Q86XW9 330 aa10.72□□□□□ -0.69
ATG4A-203ENST00000372232 ZBTB9Q96C00 473 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms