RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 SH2B1Q9NRF2 756 aaPredicted RBP25.76■■□□□ 1.71
TM9SF3-201ENST00000371142 NKTRP30414 1462 aaKnown RBP25.75■■□□□ 1.71
TM9SF3-201ENST00000371142 SSFA2P28290 1259 aa25.75■■□□□ 1.71
TM9SF3-201ENST00000371142 CASQ1P31415 396 aa25.75■■□□□ 1.71
TM9SF3-201ENST00000371142 SSRP1Q08945 709 aaKnown RBP25.75■■□□□ 1.71
TM9SF3-201ENST00000371142 TMX1Q9H3N1 280 aa25.75■■□□□ 1.71
TM9SF3-201ENST00000371142 DNA2P51530 1060 aa25.75■■□□□ 1.71
TM9SF3-201ENST00000371142 AMOTQ4VCS5 1084 aa25.74■■□□□ 1.71
TM9SF3-201ENST00000371142 CKAP2LQ8IYA6 745 aa25.74■■□□□ 1.71
TM9SF3-201ENST00000371142 GOLGA8BA8MQT2 603 aa25.74■■□□□ 1.71
TM9SF3-201ENST00000371142 TOP1P11387 765 aaKnown RBP25.74■■□□□ 1.71
TM9SF3-201ENST00000371142 PDCL2Q8N4E4 241 aa25.74■■□□□ 1.71
TM9SF3-201ENST00000371142 GOLGA8AA7E2F4 631 aa25.74■■□□□ 1.71
TM9SF3-201ENST00000371142 ZSCAN30Q86W11 494 aa25.73■■□□□ 1.71
TM9SF3-201ENST00000371142 IFIT3O14879 490 aaKnown RBP25.73■■□□□ 1.71
TM9SF3-201ENST00000371142 IQCA1Q86XH1 822 aa25.73■■□□□ 1.71
TM9SF3-201ENST00000371142 CCDC113Q9H0I3 377 aa25.73■■□□□ 1.71
TM9SF3-201ENST00000371142 ZSCAN12O43309 604 aa25.73■■□□□ 1.71
TM9SF3-201ENST00000371142 HMGB1P09429 215 aaKnown RBP25.73■■□□□ 1.71
TM9SF3-201ENST00000371142 CLIP2Q9UDT6 1046 aa25.72■■□□□ 1.71
TM9SF3-201ENST00000371142 CPLX3Q8WVH0 158 aa25.72■■□□□ 1.71
TM9SF3-201ENST00000371142 CRACR2AQ9BSW2 395 aa25.72■■□□□ 1.71
TM9SF3-201ENST00000371142 KIF5CO60282 957 aa25.72■■□□□ 1.71
TM9SF3-201ENST00000371142 GPTP24298 496 aa25.72■■□□□ 1.71
TM9SF3-201ENST00000371142 NLRP5P59047 1200 aa25.72■■□□□ 1.71
TM9SF3-201ENST00000371142 ANKRD18BA2A2Z9 1011 aa25.72■■□□□ 1.71
TM9SF3-201ENST00000371142 TMCO3Q6UWJ1 677 aa25.72■■□□□ 1.71
TM9SF3-201ENST00000371142 POLA1P09884 1462 aaPredicted RBP25.71■■□□□ 1.71
TM9SF3-201ENST00000371142 A0A087WZG4 1122 aa25.71■■□□□ 1.71
TM9SF3-201ENST00000371142 ADAMTS2O95450 1211 aa25.71■■□□□ 1.71
TM9SF3-201ENST00000371142 CCDC144CPQ8IYA2 1237 aa25.71■■□□□ 1.71
TM9SF3-201ENST00000371142 ZNF219Q9P2Y4 722 aaPredicted RBP25.71■■□□□ 1.71
TM9SF3-201ENST00000371142 CCDC178Q5BJE1 867 aa25.71■■□□□ 1.71
TM9SF3-201ENST00000371142 LIMCH1Q9UPQ0 1083 aa25.71■■□□□ 1.71
TM9SF3-201ENST00000371142 URI1O94763 535 aaPredicted RBP25.71■■□□□ 1.71
TM9SF3-201ENST00000371142 CNNM3Q8NE01 707 aa25.71■■□□□ 1.71
TM9SF3-201ENST00000371142 PHAXQ9H814 394 aaKnown RBP25.71■■□□□ 1.71
TM9SF3-201ENST00000371142 ZBTB3Q9H5J0 574 aa25.7■■□□□ 1.7
TM9SF3-201ENST00000371142 ABCC11Q96J66 1382 aa25.7■■□□□ 1.7
TM9SF3-201ENST00000371142 CETN2P41208 172 aa25.7■■□□□ 1.7
TM9SF3-201ENST00000371142 KIF4BQ2VIQ3 1234 aa25.7■■□□□ 1.7
TM9SF3-201ENST00000371142 NUP88Q99567 741 aaPredicted RBP25.7■■□□□ 1.7
TM9SF3-201ENST00000371142 ARHGEF11O15085 1522 aa25.7■■□□□ 1.7
TM9SF3-201ENST00000371142 TRIM21P19474 475 aaKnown RBP25.7■■□□□ 1.7
TM9SF3-201ENST00000371142 TMEM266Q2M3C6 531 aa25.69■■□□□ 1.7
TM9SF3-201ENST00000371142 PPP4R3AQ6IN85 833 aa25.69■■□□□ 1.7
TM9SF3-201ENST00000371142 HYPKQ9NX55 129 aa25.69■■□□□ 1.7
TM9SF3-201ENST00000371142 CUL5Q93034 780 aa25.69■■□□□ 1.7
TM9SF3-201ENST00000371142 EPRSP07814 1512 aaKnown RBP25.69■■□□□ 1.7
TM9SF3-201ENST00000371142 CCDC194A0A1B0GVG4 234 aa25.69■■□□□ 1.7
TM9SF3-201ENST00000371142 RPGRQ92834 1020 aaKnown RBP25.69■■□□□ 1.7
TM9SF3-201ENST00000371142 MAP3K2Q9Y2U5 619 aa25.69■■□□□ 1.7
TM9SF3-201ENST00000371142 DYDC1Q8WWB3 177 aa25.68■■□□□ 1.7
TM9SF3-201ENST00000371142 GDPD2Q9HCC8 539 aa25.68■■□□□ 1.7
TM9SF3-201ENST00000371142 FSIP1Q8NA03 581 aa25.68■■□□□ 1.7
TM9SF3-201ENST00000371142 PLEKHH1Q9ULM0 1364 aa25.68■■□□□ 1.7
TM9SF3-201ENST00000371142 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 GOLIM4O00461 696 aa25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 GOPCQ9HD26 462 aa25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 FOXO3O43524 673 aa25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 LIG1P18858 919 aa25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 SLC4A8Q2Y0W8 1093 aa25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 TRMT1Q9NXH9 659 aaKnown RBP25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 GJB2P29033 226 aa25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 RAB34Q9BZG1 259 aa25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 DBF4Q9UBU7 674 aaPredicted RBP25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 CATIPQ7Z7H3 387 aa25.67■■□□□ 1.7
TM9SF3-201ENST00000371142 TRIM27P14373 513 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 TNPO1Q92973 898 aaKnown RBP25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 GBP3Q9H0R5 595 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 RNF41Q9H4P4 317 aaPredicted RBP25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 BIN1O00499 593 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 CCDC141Q6ZP82 1450 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 FLIIQ13045 1269 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 TDRD12Q587J7 1177 aaKnown RBP25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 TFIP11Q9UBB9 837 aaKnown RBP25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 USP25Q9UHP3 1055 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 PPFIA3O75145 1194 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 CCDC97Q96F63 343 aaPredicted RBP25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 PHF8Q9UPP1 1060 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 KIF2AO00139 706 aaPredicted RBP25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 VPS36Q86VN1 386 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 RAB11FIP4Q86YS3 637 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 KIF18AQ8NI77 898 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 TOPBP1Q92547 1522 aa25.66■■□□□ 1.7
TM9SF3-201ENST00000371142 C11orf95C9JLR9 678 aaPredicted RBP25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 LUZP1Q86V48 1076 aa25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 ANAPC15P60006 121 aa25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 WDR78Q5VTH9 848 aa25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 CTNNBL1Q8WYA6 563 aaPredicted RBP25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 EVI5LQ96CN4 794 aa25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 TSHZ3Q63HK5 1081 aa25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 TNNT1P13805 278 aa25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 TBC1D2Q9BYX2 928 aa25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 SNRKQ9NRH2 765 aa25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 TRMT1LQ7Z2T5 733 aaKnown RBP25.65■■□□□ 1.7
TM9SF3-201ENST00000371142 NAIPQ13075 1403 aa25.64■■□□□ 1.7
TM9SF3-201ENST00000371142 MAP2K1Q02750 393 aaPredicted RBP25.64■■□□□ 1.7
TM9SF3-201ENST00000371142 PRKCSHP14314 528 aaPredicted RBP25.64■■□□□ 1.69
TM9SF3-201ENST00000371142 ATP5J2-PTCD1G3V325 749 aa25.64■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms