RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 AKNAQ7Z591 1439 aa8.6□□□□□ -1.03
VPS13A-202ENST00000357409 ZNF830Q96NB3 372 aaPredicted RBP8.6□□□□□ -1.03
VPS13A-202ENST00000357409 TCP10Q12799 353 aa8.6□□□□□ -1.03
VPS13A-202ENST00000357409 ZNHIT6Q9NWK9 470 aaKnown RBP8.6□□□□□ -1.03
VPS13A-202ENST00000357409 BICD1Q96G01 975 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 SMG6Q86US8 1419 aaKnown RBP8.59□□□□□ -1.03
VPS13A-202ENST00000357409 PRKCSHP14314 528 aaPredicted RBP8.59□□□□□ -1.03
VPS13A-202ENST00000357409 HMGN5P82970 282 aaKnown RBP8.59□□□□□ -1.03
VPS13A-202ENST00000357409 ARID5AQ03989 594 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 PI4KAP2A4QPH2 592 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 MICU3Q86XE3 530 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 PI4KAP1Q8N8J0 262 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 NOL7Q9UMY1 257 aaKnown RBP8.59□□□□□ -1.03
VPS13A-202ENST00000357409 ATF7IPQ6VMQ6 1270 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 ANKRD24Q8TF21 1146 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 RBM27Q9P2N5 1060 aaKnown RBP8.59□□□□□ -1.03
VPS13A-202ENST00000357409 SIRT1Q96EB6 747 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 SLC26A6Q9BXS9 759 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 DDX39AO00148 427 aaKnown RBP8.59□□□□□ -1.03
VPS13A-202ENST00000357409 MYO1BO43795 1136 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 UBE3BQ7Z3V4 1068 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 SYCP3Q8IZU3 236 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 ZNF652Q9Y2D9 606 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 CCDC18Q5T9S5 1454 aa8.59□□□□□ -1.03
VPS13A-202ENST00000357409 CADPSQ9ULU8 1353 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 ANKRD18BA2A2Z9 1011 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 SETDB2Q96T68 719 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 NAT10Q9H0A0 1025 aaKnown RBP8.58□□□□□ -1.04
VPS13A-202ENST00000357409 PHF8Q9UPP1 1060 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 CNTLNQ9NXG0 1405 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 ATP2C2O75185 946 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 PPP2R5CQ13362 524 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 TCHPQ9BT92 498 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 FAM98CQ17RN3 349 aaKnown RBP8.58□□□□□ -1.04
VPS13A-202ENST00000357409 FKBP15Q5T1M5 1219 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 RABEP1Q15276 862 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 TEX35Q5T0J7 233 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 ZSCAN25Q6NSZ9 544 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 ZNF396Q96N95 335 aaPredicted RBP8.58□□□□□ -1.04
VPS13A-202ENST00000357409 SYCE3A1L190 88 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 NOP2P46087 812 aaKnown RBP8.58□□□□□ -1.04
VPS13A-202ENST00000357409 NFATC2IPQ8NCF5 419 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 NDUFB9Q9Y6M9 179 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 CALM1P0DP23 149 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 CALM2P0DP24 149 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 CALM3P0DP25 149 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 COPS6Q7L5N1 327 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 KSR1Q8IVT5 923 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 FERMT2Q96AC1 680 aa8.58□□□□□ -1.04
VPS13A-202ENST00000357409 GOLGA8AA7E2F4 631 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 GOLGA8BA8MQT2 603 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 URI1O94763 535 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-202ENST00000357409 CABP5Q9NP86 173 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 WDHD1O75717 1129 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-202ENST00000357409 NBPF6Q5VWK0 638 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 NBPF5PQ86XG9 351 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-202ENST00000357409 NBPF4Q96M43 638 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 CYP7A1P22680 504 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 CCDC102AQ96A19 550 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 MRRFQ96E11 262 aaKnown RBP8.57□□□□□ -1.04
VPS13A-202ENST00000357409 PRDM2Q13029 1718 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 RAB3GAP1Q15042 981 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 PTGS1P23219 599 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 CTNNA2P26232 953 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 PPP6R1Q9UPN7 881 aa8.57□□□□□ -1.04
VPS13A-202ENST00000357409 ROCK1Q13464 1354 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 SLC12A7Q9Y666 1083 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 POLR3GO15318 223 aaPredicted RBP8.56□□□□□ -1.04
VPS13A-202ENST00000357409 GPR162Q16538 588 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 TMEM67Q5HYA8 995 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 PRPF38AQ8NAV1 312 aaKnown RBP8.56□□□□□ -1.04
VPS13A-202ENST00000357409 CCDC61Q9Y6R9 512 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 LMAN1P49257 510 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 CBX1P83916 185 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 HEATR3Q7Z4Q2 680 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 RAB11FIP3O75154 756 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 IDI1Q13907 227 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 MAP3K12Q12852 859 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 IQCA1Q86XH1 822 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 BTG4Q9NY30 223 aa8.56□□□□□ -1.04
VPS13A-202ENST00000357409 CNGA1P29973 690 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 CCT4P50991 539 aaKnown RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 SMC1AQ14683 1233 aaKnown RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 NKX1-1Q15270 411 aaPredicted RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 CNNM3Q8NE01 707 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 KAT14Q9H8E8 782 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 BCS1LQ9Y276 419 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 ADGRF5Q8IZF2 1346 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 CCDC7Q96M83 1385 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 SSRP1Q08945 709 aaKnown RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 ZC3H12CQ9C0D7 883 aaKnown RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 ARHGAP5Q13017 1502 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 UACAQ9BZF9 1416 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 GSTTP1A0A1W2PQM5 241 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 CCDC112Q8NEF3 446 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 CUL5Q93034 780 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 PAIP2Q9BPZ3 127 aaKnown RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 SLC4A4Q9Y6R1 1079 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 K7ELQ4 463 aaPredicted RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 PPP1R12AO14974 1030 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms