RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CANXP27824 592 aaKnown RBP12.63□□□□□ -0.39
SYNE1-203ENST00000354674 NGLY1Q96IV0 654 aa12.63□□□□□ -0.39
SYNE1-203ENST00000354674 CRBNQ96SW2 442 aa12.63□□□□□ -0.39
SYNE1-203ENST00000354674 KIF16BQ96L93 1317 aa12.63□□□□□ -0.39
SYNE1-203ENST00000354674 ELL2O00472 640 aaPredicted RBP12.63□□□□□ -0.39
SYNE1-203ENST00000354674 HOXB7P09629 217 aa12.63□□□□□ -0.39
SYNE1-203ENST00000354674 MS4A1P11836 297 aa12.62□□□□□ -0.39
SYNE1-203ENST00000354674 ARHGAP45Q92619 1136 aa12.62□□□□□ -0.39
SYNE1-203ENST00000354674 KCNQ3O43525 872 aa12.61□□□□□ -0.39
SYNE1-203ENST00000354674 ZKSCAN2Q63HK3 967 aa12.61□□□□□ -0.39
SYNE1-203ENST00000354674 NFATC2IPQ8NCF5 419 aa12.61□□□□□ -0.39
SYNE1-203ENST00000354674 GLI3P10071 1580 aa12.61□□□□□ -0.39
SYNE1-203ENST00000354674 NOB1Q9ULX3 412 aaKnown RBP12.61□□□□□ -0.39
SYNE1-203ENST00000354674 UBR2Q8IWV8 1755 aa12.61□□□□□ -0.39
SYNE1-203ENST00000354674 THSD7AQ9UPZ6 1657 aa12.6□□□□□ -0.39
SYNE1-203ENST00000354674 EXOC5O00471 708 aa12.6□□□□□ -0.39
SYNE1-203ENST00000354674 ZBTB22O15209 634 aa12.6□□□□□ -0.39
SYNE1-203ENST00000354674 ZNF790Q6PG37 636 aa12.6□□□□□ -0.39
SYNE1-203ENST00000354674 ATF7IPQ6VMQ6 1270 aa12.6□□□□□ -0.39
SYNE1-203ENST00000354674 DDX54Q8TDD1 881 aaKnown RBP12.6□□□□□ -0.39
SYNE1-203ENST00000354674 TRIM27P14373 513 aa12.59□□□□□ -0.39
SYNE1-203ENST00000354674 USP21Q9UK80 565 aa12.59□□□□□ -0.39
SYNE1-203ENST00000354674 ATRNO75882 1429 aa12.59□□□□□ -0.39
SYNE1-203ENST00000354674 IPO8O15397 1037 aaKnown RBP12.59□□□□□ -0.39
SYNE1-203ENST00000354674 IGSF3O75054 1194 aa12.59□□□□□ -0.39
SYNE1-203ENST00000354674 CABP4P57796 275 aa12.59□□□□□ -0.39
SYNE1-203ENST00000354674 CACNA1FO60840 1977 aa12.59□□□□□ -0.39
SYNE1-203ENST00000354674 RLBP1P12271 317 aa12.59□□□□□ -0.39
SYNE1-203ENST00000354674 TNNQ9UQP3 1299 aa12.59□□□□□ -0.39
SYNE1-203ENST00000354674 R3HCC1Q9Y3T6 440 aaKnown RBP12.59□□□□□ -0.39
SYNE1-203ENST00000354674 GIGYF1O75420 1035 aaPredicted RBP12.58□□□□□ -0.4
SYNE1-203ENST00000354674 ITGB4P16144 1822 aa12.58□□□□□ -0.4
SYNE1-203ENST00000354674 RGS12O14924 1447 aa12.58□□□□□ -0.4
SYNE1-203ENST00000354674 C5P01031 1676 aa12.58□□□□□ -0.4
SYNE1-203ENST00000354674 KCPQ6ZWJ8 1503 aa12.57□□□□□ -0.4
SYNE1-203ENST00000354674 CCDC30Q5VVM6 783 aa12.57□□□□□ -0.4
SYNE1-203ENST00000354674 DZIP1LQ8IYY4 767 aaKnown RBP12.57□□□□□ -0.4
SYNE1-203ENST00000354674 PANK1Q8TE04 598 aa12.57□□□□□ -0.4
SYNE1-203ENST00000354674 DDB1Q16531 1140 aa12.57□□□□□ -0.4
SYNE1-203ENST00000354674 CHMP4AQ9BY43 222 aa12.57□□□□□ -0.4
SYNE1-203ENST00000354674 AFF2P51816 1311 aa12.57□□□□□ -0.4
SYNE1-203ENST00000354674 PTPRCP08575 1304 aa12.56□□□□□ -0.4
SYNE1-203ENST00000354674 MEX3CQ5U5Q3 659 aaKnown RBP12.56□□□□□ -0.4
SYNE1-203ENST00000354674 ABCC4O15439 1325 aa12.56□□□□□ -0.4
SYNE1-203ENST00000354674 SLC39A6Q13433 755 aa12.56□□□□□ -0.4
SYNE1-203ENST00000354674 ANP32BQ92688 251 aaKnown RBP12.56□□□□□ -0.4
SYNE1-203ENST00000354674 LAMB4A4D0S4 1761 aa12.55□□□□□ -0.4
SYNE1-203ENST00000354674 SEC24BO95487 1268 aa12.55□□□□□ -0.4
SYNE1-203ENST00000354674 DOT1LQ8TEK3 1739 aa12.55□□□□□ -0.4
SYNE1-203ENST00000354674 BCL9O00512 1426 aa12.55□□□□□ -0.4
SYNE1-203ENST00000354674 ONECUT3O60422 494 aaPredicted RBP12.55□□□□□ -0.4
SYNE1-203ENST00000354674 SLC4A2P04920 1241 aa12.55□□□□□ -0.4
SYNE1-203ENST00000354674 MVPQ14764 893 aaKnown RBP12.55□□□□□ -0.4
SYNE1-203ENST00000354674 C8orf34Q49A92 452 aa12.55□□□□□ -0.4
SYNE1-203ENST00000354674 MARCH10Q8NA82 808 aaPredicted RBP12.55□□□□□ -0.4
SYNE1-203ENST00000354674 CCDC9Q9Y3X0 531 aaKnown RBP12.55□□□□□ -0.4
SYNE1-203ENST00000354674 HDGFL1Q5TGJ6 251 aa12.55□□□□□ -0.4
SYNE1-203ENST00000354674 API5Q9BZZ5 524 aaKnown RBP12.55□□□□□ -0.4
SYNE1-203ENST00000354674 FAM161AQ3B820 660 aa12.54□□□□□ -0.4
SYNE1-203ENST00000354674 KLHL34Q8N239 644 aa12.54□□□□□ -0.4
SYNE1-203ENST00000354674 ZNF496Q96IT1 587 aaPredicted RBP12.54□□□□□ -0.4
SYNE1-203ENST00000354674 GJD4Q96KN9 370 aaPredicted RBP12.54□□□□□ -0.4
SYNE1-203ENST00000354674 COG6Q9Y2V7 657 aa12.54□□□□□ -0.4
SYNE1-203ENST00000354674 FAM98CQ17RN3 349 aaKnown RBP12.54□□□□□ -0.4
SYNE1-203ENST00000354674 JARID2Q92833 1246 aaPredicted RBP12.54□□□□□ -0.4
SYNE1-203ENST00000354674 STK31Q9BXU1 1019 aa12.54□□□□□ -0.4
SYNE1-203ENST00000354674 CLUAP1Q96AJ1 413 aa12.53□□□□□ -0.4
SYNE1-203ENST00000354674 FMNL2Q96PY5 1086 aa12.53□□□□□ -0.4
SYNE1-203ENST00000354674 N4BP2Q86UW6 1770 aaPredicted RBP12.53□□□□□ -0.4
SYNE1-203ENST00000354674 FTSJ3Q8IY81 847 aaKnown RBP12.53□□□□□ -0.4
SYNE1-203ENST00000354674 TTC5Q8N0Z6 440 aa12.53□□□□□ -0.4
SYNE1-203ENST00000354674 PIGBQ92521 554 aa12.53□□□□□ -0.4
SYNE1-203ENST00000354674 TMOD3Q9NYL9 352 aa12.53□□□□□ -0.4
SYNE1-203ENST00000354674 TRPC5Q9UL62 973 aaPredicted RBP12.53□□□□□ -0.4
SYNE1-203ENST00000354674 PRAMEF22A3QJZ6 481 aa12.53□□□□□ -0.4
SYNE1-203ENST00000354674 TPM2P07951 284 aa12.53□□□□□ -0.4
SYNE1-203ENST00000354674 G2E3Q7L622 706 aa12.53□□□□□ -0.4
SYNE1-203ENST00000354674 TMEM57Q8N5G2 664 aa12.53□□□□□ -0.4
SYNE1-203ENST00000354674 ZNF830Q96NB3 372 aaPredicted RBP12.53□□□□□ -0.4
SYNE1-203ENST00000354674 SNRPA1P09661 255 aaKnown RBP12.52□□□□□ -0.41
SYNE1-203ENST00000354674 TAF7LQ5H9L4 462 aa12.52□□□□□ -0.41
SYNE1-203ENST00000354674 INTS3Q68E01 1043 aaKnown RBP12.51□□□□□ -0.41
SYNE1-203ENST00000354674 FLIIQ13045 1269 aa12.51□□□□□ -0.41
SYNE1-203ENST00000354674 PDIA6Q15084 440 aa12.51□□□□□ -0.41
SYNE1-203ENST00000354674 GRPEL1Q9HAV7 217 aa12.51□□□□□ -0.41
SYNE1-203ENST00000354674 DBF4Q9UBU7 674 aaPredicted RBP12.51□□□□□ -0.41
SYNE1-203ENST00000354674 ATG3Q9NT62 314 aa12.51□□□□□ -0.41
SYNE1-203ENST00000354674 CHPF2Q9P2E5 772 aa12.51□□□□□ -0.41
SYNE1-203ENST00000354674 DDX19BQ9UMR2 479 aa12.51□□□□□ -0.41
SYNE1-203ENST00000354674 PXDNLA1KZ92 1463 aa12.5□□□□□ -0.41
SYNE1-203ENST00000354674 CICQ96RK0 1608 aaPredicted RBP12.5□□□□□ -0.41
SYNE1-203ENST00000354674 EIF2S2P20042 333 aaKnown RBP12.5□□□□□ -0.41
SYNE1-203ENST00000354674 TSC1Q92574 1164 aa12.5□□□□□ -0.41
SYNE1-203ENST00000354674 NECTIN2Q92692 538 aa12.5□□□□□ -0.41
SYNE1-203ENST00000354674 TRAK2O60296 914 aa12.5□□□□□ -0.41
SYNE1-203ENST00000354674 CERS3Q8IU89 383 aa12.5□□□□□ -0.41
SYNE1-203ENST00000354674 FBXO41Q8TF61 875 aa12.5□□□□□ -0.41
SYNE1-203ENST00000354674 CBX1P83916 185 aa12.49□□□□□ -0.41
SYNE1-203ENST00000354674 LRP10Q7Z4F1 713 aa12.49□□□□□ -0.41
SYNE1-203ENST00000354674 DDX21Q9NR30 783 aaKnown RBP eCLIP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms