RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PTPRCP08575 1304 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 SOS1Q07889 1333 aaPredicted RBP5.25□□□□□ -1.57
MCF2-201ENST00000338585 SPATA31A5Q5VU36 1347 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 SPATA31A7Q8IWB4 1347 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 ZBTB7BO15156 539 aaPredicted RBP5.25□□□□□ -1.57
MCF2-201ENST00000338585 PROSER3Q2NL68 480 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 CENPQQ7L2Z9 268 aaPredicted RBP5.25□□□□□ -1.57
MCF2-201ENST00000338585 C1orf115Q9H7X2 142 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 C5P01031 1676 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 WNK3Q9BYP7 1800 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 HOXB7P09629 217 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 FKBP5Q13451 457 aaPredicted RBP5.25□□□□□ -1.57
MCF2-201ENST00000338585 SLC4A10Q6U841 1118 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 NWD2Q9ULI1 1742 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 BCL9LQ86UU0 1499 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 GLI3P10071 1580 aa5.25□□□□□ -1.57
MCF2-201ENST00000338585 ERVV-2B6SEH9 535 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 EXOC5O00471 708 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 PIP4K2AP48426 406 aaPredicted RBP5.24□□□□□ -1.57
MCF2-201ENST00000338585 INTS3Q68E01 1043 aaKnown RBP5.24□□□□□ -1.57
MCF2-201ENST00000338585 UNC5CLQ8IV45 518 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 TTC5Q8N0Z6 440 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 USP16Q9Y5T5 823 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 SPATA31A6Q5VVP1 1343 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 TNS2Q63HR2 1409 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 PTCD1O75127 700 aaKnown RBP5.24□□□□□ -1.57
MCF2-201ENST00000338585 PRKAR2AP13861 404 aaKnown RBP5.24□□□□□ -1.57
MCF2-201ENST00000338585 TSHZ2Q9NRE2 1034 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 POTEIP0CG38 1075 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 AAMPQ13685 434 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 PDIA6Q15084 440 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 PIGBQ92521 554 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 FMNL2Q96PY5 1086 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 MEIS3Q99687 375 aa5.24□□□□□ -1.57
MCF2-201ENST00000338585 DBF4Q9UBU7 674 aaPredicted RBP5.24□□□□□ -1.57
MCF2-201ENST00000338585 SNRPA1P09661 255 aaKnown RBP5.23□□□□□ -1.57
MCF2-201ENST00000338585 MYL6BP14649 208 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 DDB1Q16531 1140 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 FAM98CQ17RN3 349 aaKnown RBP5.23□□□□□ -1.57
MCF2-201ENST00000338585 FNBP4Q8N3X1 1017 aaPredicted RBP5.23□□□□□ -1.57
MCF2-201ENST00000338585 TMOD3Q9NYL9 352 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 ASAP1Q9ULH1 1129 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 THRAP3Q9Y2W1 955 aaKnown RBP5.23□□□□□ -1.57
MCF2-201ENST00000338585 CACNA1FO60840 1977 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 KCPQ6ZWJ8 1503 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 KAT6BQ8WYB5 2073 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 ADCY9O60503 1353 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 PAPPAQ13219 1627 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 PI4KAP2A4QPH2 592 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 AIMP1Q12904 312 aaKnown RBP5.23□□□□□ -1.57
MCF2-201ENST00000338585 VPS72Q15906 364 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 BARGINQ6ZT62 677 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 SIRT2Q8IXJ6 389 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 PI4KAP1Q8N8J0 262 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 MARCH10Q8NA82 808 aaPredicted RBP5.23□□□□□ -1.57
MCF2-201ENST00000338585 SYTL4Q96C24 671 aaPredicted RBP5.23□□□□□ -1.57
MCF2-201ENST00000338585 USP21Q9UK80 565 aa5.23□□□□□ -1.57
MCF2-201ENST00000338585 ITGB4P16144 1822 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 UBR2Q8IWV8 1755 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 CCT4P50991 539 aaKnown RBP5.22□□□□□ -1.57
MCF2-201ENST00000338585 HDAC1Q13547 482 aaPredicted RBP5.22□□□□□ -1.57
MCF2-201ENST00000338585 MEX3CQ5U5Q3 659 aaKnown RBP5.22□□□□□ -1.57
MCF2-201ENST00000338585 ACSBG1Q96GR2 724 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 CDCA7Q9BWT1 371 aaPredicted RBP5.22□□□□□ -1.57
MCF2-201ENST00000338585 RWDD1Q9H446 243 aaPredicted RBP5.22□□□□□ -1.57
MCF2-201ENST00000338585 DDX21Q9NR30 783 aaKnown RBP eCLIP5.22□□□□□ -1.57
MCF2-201ENST00000338585 ATG3Q9NT62 314 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 A0A0G2JS52 829 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 BCL9O00512 1426 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 PRIM1P49642 420 aaKnown RBP5.22□□□□□ -1.57
MCF2-201ENST00000338585 RGS3P49796 1198 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 LRP10Q7Z4F1 713 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 DOT1LQ8TEK3 1739 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 OTUD5Q96G74 571 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 AFF2P51816 1311 aa5.22□□□□□ -1.57
MCF2-201ENST00000338585 ATP10DQ9P241 1426 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 NBPF26B4DH59 902 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 MYT1Q01538 1121 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 NBPF14Q5TI25 921 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 NBPF10Q6P3W6 841 aaKnown RBP5.21□□□□□ -1.57
MCF2-201ENST00000338585 NBPF15Q8N660 670 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 XAGE3Q8WTP9 111 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 DNAAF4Q8WXU2 420 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 CHMP4AQ9BY43 222 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 HYPKQ9NX55 129 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 PDZRN3Q9UPQ7 1066 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 MAP3K2Q9Y2U5 619 aa5.21□□□□□ -1.57
MCF2-201ENST00000338585 LAMB4A4D0S4 1761 aa5.21□□□□□ -1.58
MCF2-201ENST00000338585 A1BGP04217 495 aa5.21□□□□□ -1.58
MCF2-201ENST00000338585 BEND3Q5T5X7 828 aa5.21□□□□□ -1.58
MCF2-201ENST00000338585 KSR2Q6VAB6 950 aa5.21□□□□□ -1.58
MCF2-201ENST00000338585 COPS6Q7L5N1 327 aa5.21□□□□□ -1.58
MCF2-201ENST00000338585 DCBLD2Q96PD2 775 aa5.21□□□□□ -1.58
MCF2-201ENST00000338585 SLC4A9Q96Q91 983 aa5.21□□□□□ -1.58
MCF2-201ENST00000338585 USP44Q9H0E7 712 aa5.21□□□□□ -1.58
MCF2-201ENST00000338585 CHMP4BQ9H444 224 aaKnown RBP5.21□□□□□ -1.58
MCF2-201ENST00000338585 PXDNLA1KZ92 1463 aa5.21□□□□□ -1.58
MCF2-201ENST00000338585 KCNQ2O43526 872 aa5.2□□□□□ -1.58
MCF2-201ENST00000338585 CWF19L2Q2TBE0 894 aaKnown RBP5.2□□□□□ -1.58
MCF2-201ENST00000338585 FAM182BQ5T319 152 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms