RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 GOLGB1Q14789 3259 aaKnown RBP20.88■□□□□ 0.93
CLN3-201ENST00000333496 RRP7AQ9Y3A4 280 aaKnown RBP20.88■□□□□ 0.93
CLN3-201ENST00000333496 SOS1Q07889 1333 aaPredicted RBP20.88■□□□□ 0.93
CLN3-201ENST00000333496 ANP32CO43423 234 aa20.87■□□□□ 0.93
CLN3-201ENST00000333496 RFC4P35249 363 aa20.87■□□□□ 0.93
CLN3-201ENST00000333496 PRAMEF22A3QJZ6 481 aa20.86■□□□□ 0.93
CLN3-201ENST00000333496 GYS1P13807 737 aa20.86■□□□□ 0.93
CLN3-201ENST00000333496 TEX13AQ9BXU3 409 aaPredicted RBP20.86■□□□□ 0.93
CLN3-201ENST00000333496 STARD3NLO95772 234 aa20.86■□□□□ 0.93
CLN3-201ENST00000333496 NEUROD2Q15784 382 aa20.85■□□□□ 0.93
CLN3-201ENST00000333496 SRP68Q9UHB9 627 aaKnown RBP20.85■□□□□ 0.93
CLN3-201ENST00000333496 USP16Q9Y5T5 823 aa20.85■□□□□ 0.93
CLN3-201ENST00000333496 TRIM35Q9UPQ4 493 aa20.84■□□□□ 0.93
CLN3-201ENST00000333496 USP42Q9H9J4 1324 aaKnown RBP20.84■□□□□ 0.93
CLN3-201ENST00000333496 COL15A1P39059 1388 aa20.84■□□□□ 0.93
CLN3-201ENST00000333496 LAMB4A4D0S4 1761 aa20.84■□□□□ 0.93
CLN3-201ENST00000333496 CANXP27824 592 aaKnown RBP20.83■□□□□ 0.93
CLN3-201ENST00000333496 KLHL34Q8N239 644 aa20.83■□□□□ 0.93
CLN3-201ENST00000333496 NLGN1Q8N2Q7 840 aa20.82■□□□□ 0.92
CLN3-201ENST00000333496 PNISRQ8TF01 805 aaKnown RBP20.82■□□□□ 0.92
CLN3-201ENST00000333496 A1BGP04217 495 aa20.82■□□□□ 0.92
CLN3-201ENST00000333496 SNRPA1P09661 255 aaKnown RBP20.82■□□□□ 0.92
CLN3-201ENST00000333496 EIF5P55010 431 aaKnown RBP20.82■□□□□ 0.92
CLN3-201ENST00000333496 LMOD3Q0VAK6 560 aa20.82■□□□□ 0.92
CLN3-201ENST00000333496 MMP10P09238 476 aa20.81■□□□□ 0.92
CLN3-201ENST00000333496 NLGN2Q8NFZ4 835 aa20.81■□□□□ 0.92
CLN3-201ENST00000333496 KIF13BQ9NQT8 1826 aa20.81■□□□□ 0.92
CLN3-201ENST00000333496 EIF4A1P60842 406 aaKnown RBP20.8■□□□□ 0.92
CLN3-201ENST00000333496 FKBP8Q14318 412 aa20.8■□□□□ 0.92
CLN3-201ENST00000333496 APAF1O14727 1248 aa20.79■□□□□ 0.92
CLN3-201ENST00000333496 USPL1Q5W0Q7 1092 aa20.79■□□□□ 0.92
CLN3-201ENST00000333496 MRS2Q9HD23 443 aa20.79■□□□□ 0.92
CLN3-201ENST00000333496 NARFQ9UHQ1 456 aa20.79■□□□□ 0.92
CLN3-201ENST00000333496 IL6STP40189 918 aaPredicted RBP20.78■□□□□ 0.92
CLN3-201ENST00000333496 ZPR1O75312 459 aa20.78■□□□□ 0.92
CLN3-201ENST00000333496 PIP4K2AP48426 406 aaPredicted RBP20.78■□□□□ 0.92
CLN3-201ENST00000333496 BCL2L12Q9HB09 334 aa20.78■□□□□ 0.92
CLN3-201ENST00000333496 CD2APQ9Y5K6 639 aa20.78■□□□□ 0.92
CLN3-201ENST00000333496 AFDNP55196 1824 aaKnown RBP20.78■□□□□ 0.92
CLN3-201ENST00000333496 SCN7AQ01118 1682 aa20.77■□□□□ 0.92
CLN3-201ENST00000333496 GIGYF1O75420 1035 aaPredicted RBP20.77■□□□□ 0.92
CLN3-201ENST00000333496 TSPYL4Q9UJ04 414 aa20.77■□□□□ 0.92
CLN3-201ENST00000333496 BCORQ6W2J9 1755 aa20.76■□□□□ 0.91
CLN3-201ENST00000333496 KIAA1551Q9HCM1 1747 aa20.76■□□□□ 0.91
CLN3-201ENST00000333496 BABAM1Q9NWV8 329 aa20.76■□□□□ 0.91
CLN3-201ENST00000333496 NBPF26B4DH59 902 aa20.75■□□□□ 0.91
CLN3-201ENST00000333496 TM4SF1P30408 202 aa20.75■□□□□ 0.91
CLN3-201ENST00000333496 NBPF10Q6P3W6 841 aaKnown RBP20.75■□□□□ 0.91
CLN3-201ENST00000333496 NBPF15Q8N660 670 aa20.75■□□□□ 0.91
CLN3-201ENST00000333496 DDR1Q08345 913 aa20.75■□□□□ 0.91
CLN3-201ENST00000333496 ZNF330Q9Y3S2 320 aaPredicted RBP20.75■□□□□ 0.91
CLN3-201ENST00000333496 N4BP2Q86UW6 1770 aaPredicted RBP20.74■□□□□ 0.91
CLN3-201ENST00000333496 TBC1D2BQ9UPU7 963 aa20.74■□□□□ 0.91
CLN3-201ENST00000333496 NRXN2Q9P2S2 1712 aa20.73■□□□□ 0.91
CLN3-201ENST00000333496 A0A087WZG4 1122 aa20.73■□□□□ 0.91
CLN3-201ENST00000333496 CHL1O00533 1208 aa20.73■□□□□ 0.91
CLN3-201ENST00000333496 PARP3Q9Y6F1 533 aa20.73■□□□□ 0.91
CLN3-201ENST00000333496 POLRMTO00411 1230 aaKnown RBP20.71■□□□□ 0.91
CLN3-201ENST00000333496 C10orf71Q711Q0 1435 aa20.71■□□□□ 0.91
CLN3-201ENST00000333496 NFIXQ14938 502 aa20.71■□□□□ 0.91
CLN3-201ENST00000333496 LAS1LQ9Y4W2 734 aaKnown RBP20.71■□□□□ 0.91
CLN3-201ENST00000333496 CHD4Q14839 1912 aa20.7■□□□□ 0.9
CLN3-201ENST00000333496 SENP3-EIF4A1A0A087X0R7 540 aa20.7■□□□□ 0.9
CLN3-201ENST00000333496 DCAF8L1A6NGE4 600 aa20.7■□□□□ 0.9
CLN3-201ENST00000333496 CAMTA2O94983 1202 aa20.7■□□□□ 0.9
CLN3-201ENST00000333496 BRCA1P38398 1863 aaKnown RBP20.7■□□□□ 0.9
CLN3-201ENST00000333496 DZIP3Q86Y13 1208 aaKnown RBP20.69■□□□□ 0.9
CLN3-201ENST00000333496 CFAP44Q96MT7 982 aa20.69■□□□□ 0.9
CLN3-201ENST00000333496 KRT24Q2M2I5 525 aa20.68■□□□□ 0.9
CLN3-201ENST00000333496 NUP98P52948 1817 aa20.68■□□□□ 0.9
CLN3-201ENST00000333496 ZNF853P0CG23 659 aa20.67■□□□□ 0.9
CLN3-201ENST00000333496 TBC1D9BQ66K14 1250 aa20.67■□□□□ 0.9
CLN3-201ENST00000333496 NPM2Q86SE8 214 aaKnown RBP20.67■□□□□ 0.9
CLN3-201ENST00000333496 PXDNLA1KZ92 1463 aa20.67■□□□□ 0.9
CLN3-201ENST00000333496 YBX3P16989 372 aaKnown RBP eCLIP20.67■□□□□ 0.9
CLN3-201ENST00000333496 GPR162Q16538 588 aa20.67■□□□□ 0.9
CLN3-201ENST00000333496 PELP1Q8IZL8 1130 aaKnown RBP20.66■□□□□ 0.9
CLN3-201ENST00000333496 MBIPQ9NS73 344 aa20.66■□□□□ 0.9
CLN3-201ENST00000333496 BICDL1Q6ZP65 573 aa20.65■□□□□ 0.9
CLN3-201ENST00000333496 SERPINB2P05120 415 aa20.64■□□□□ 0.9
CLN3-201ENST00000333496 EIF2S2P20042 333 aaKnown RBP20.64■□□□□ 0.9
CLN3-201ENST00000333496 TGFB2P61812 414 aa20.64■□□□□ 0.9
CLN3-201ENST00000333496 ANKRD31Q8N7Z5 1873 aa20.64■□□□□ 0.9
CLN3-201ENST00000333496 MYL6BP14649 208 aa20.64■□□□□ 0.89
CLN3-201ENST00000333496 PDIA6Q15084 440 aa20.64■□□□□ 0.89
CLN3-201ENST00000333496 CCDC27Q2M243 656 aa20.64■□□□□ 0.89
CLN3-201ENST00000333496 LRP10Q7Z4F1 713 aa20.64■□□□□ 0.89
CLN3-201ENST00000333496 FAM9BQ8IZU0 186 aa20.64■□□□□ 0.89
CLN3-201ENST00000333496 IFT57Q9NWB7 429 aa20.64■□□□□ 0.89
CLN3-201ENST00000333496 WWC3Q9ULE0 1092 aa20.64■□□□□ 0.89
CLN3-201ENST00000333496 A0A0G2JLW4 131 aa20.63■□□□□ 0.89
CLN3-201ENST00000333496 NGEFQ8N5V2 710 aa20.63■□□□□ 0.89
CLN3-201ENST00000333496 ERBB4Q15303 1308 aa20.63■□□□□ 0.89
CLN3-201ENST00000333496 GNAI1P63096 354 aa20.62■□□□□ 0.89
CLN3-201ENST00000333496 CLEC4GQ6UXB4 293 aa20.62■□□□□ 0.89
CLN3-201ENST00000333496 WWC1Q8IX03 1113 aa20.62■□□□□ 0.89
CLN3-201ENST00000333496 DPEP1P16444 411 aa20.61■□□□□ 0.89
CLN3-201ENST00000333496 KCNA3P22001 575 aa20.61■□□□□ 0.89
CLN3-201ENST00000333496 CALD1Q05682 793 aaKnown RBP20.61■□□□□ 0.89
CLN3-201ENST00000333496 HLFQ16534 295 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms