RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 TIGD1Q96MW7 591 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 TNMDQ9H2S6 317 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 TTC41PQ6P2S7 1318 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 EXOC6BQ9Y2D4 811 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 CCDC61Q9Y6R9 512 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 TTC21BQ7Z4L5 1316 aa5.67□□□□□ -1.5
PTPN13-201ENST00000316707 UGGT1Q9NYU2 1555 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 TYRO3Q06418 890 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 SLC4A10Q6U841 1118 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 KIF1BPQ96EK5 621 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 GPATCH3Q96I76 525 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 ZNF165P49910 485 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 HDGFP51858 240 aaKnown RBP5.66□□□□□ -1.5
PTPN13-201ENST00000316707 PTPN14Q15678 1187 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 MTMR6Q9Y217 621 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 UBTFL1P0CB47 393 aaPredicted RBP5.66□□□□□ -1.5
PTPN13-201ENST00000316707 CDC25BP30305 580 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 NCBP1Q09161 790 aaKnown RBP5.66□□□□□ -1.5
PTPN13-201ENST00000316707 SSH3Q8TE77 659 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 PDRG1Q9NUG6 133 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 GPS2Q13227 327 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 TERF2Q15554 542 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 LARP1BQ659C4 914 aaKnown RBP5.66□□□□□ -1.5
PTPN13-201ENST00000316707 SARM1Q6SZW1 724 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 TTC14Q96N46 770 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 STAG3Q9UJ98 1225 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 PYCARDQ9ULZ3 195 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 ABCC3O15438 1527 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 VPS37CA5D8V6 355 aaPredicted RBP5.66□□□□□ -1.5
PTPN13-201ENST00000316707 ZNF75DP51815 510 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 TPD52L1Q16890 204 aaPredicted RBP5.66□□□□□ -1.5
PTPN13-201ENST00000316707 TEX35Q5T0J7 233 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 GIMAP6Q6P9H5 292 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 PLPPR3Q6T4P5 718 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 A0A0U1RQG5 324 aaPredicted RBP5.66□□□□□ -1.5
PTPN13-201ENST00000316707 BECN2A8MW95 431 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 TPM1P09493 284 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 TSC1Q92574 1164 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 SRRTQ9BXP5 876 aaKnown RBP5.66□□□□□ -1.5
PTPN13-201ENST00000316707 CLSTN2Q9H4D0 955 aa5.66□□□□□ -1.5
PTPN13-201ENST00000316707 MSH6P52701 1360 aa5.65□□□□□ -1.5
PTPN13-201ENST00000316707 ATP8B1O43520 1251 aa5.65□□□□□ -1.5
PTPN13-201ENST00000316707 SLU7O95391 586 aaKnown RBP5.65□□□□□ -1.5
PTPN13-201ENST00000316707 BBXQ8WY36 941 aaPredicted RBP5.65□□□□□ -1.5
PTPN13-201ENST00000316707 NAT10Q9H0A0 1025 aaKnown RBP5.65□□□□□ -1.5
PTPN13-201ENST00000316707 LRRC7Q96NW7 1537 aa5.65□□□□□ -1.5
PTPN13-201ENST00000316707 AK2P54819 239 aa5.65□□□□□ -1.5
PTPN13-201ENST00000316707 ATL3Q6DD88 541 aa5.65□□□□□ -1.5
PTPN13-201ENST00000316707 RBM43Q6ZSC3 357 aaKnown RBP5.65□□□□□ -1.5
PTPN13-201ENST00000316707 FILIP1Q7Z7B0 1213 aa5.65□□□□□ -1.5
PTPN13-201ENST00000316707 CFAP45Q9UL16 551 aa5.65□□□□□ -1.5
PTPN13-201ENST00000316707 U2AF2P26368 475 aaKnown RBP eCLIP5.65□□□□□ -1.5
PTPN13-201ENST00000316707 KCNJ6P48051 423 aa5.65□□□□□ -1.5
PTPN13-201ENST00000316707 FLIIQ13045 1269 aa5.65□□□□□ -1.5
PTPN13-201ENST00000316707 ERC1Q8IUD2 1116 aa5.65□□□□□ -1.5
PTPN13-201ENST00000316707 DNAJC2Q99543 621 aaKnown RBP5.65□□□□□ -1.5
PTPN13-201ENST00000316707 PTGS1P23219 599 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 TPM4P67936 248 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 ZSCAN25Q6NSZ9 544 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 CEP57L1Q8IYX8 460 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 SPATA32Q96LK8 384 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 GIGYF1O75420 1035 aaPredicted RBP5.65□□□□□ -1.51
PTPN13-201ENST00000316707 KRT32Q14532 448 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 ZRSR1Q15695 479 aaKnown RBP5.65□□□□□ -1.51
PTPN13-201ENST00000316707 CLASRPQ8N2M8 674 aaKnown RBP5.65□□□□□ -1.51
PTPN13-201ENST00000316707 KCNB2Q92953 911 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 C16orf45Q96MC5 204 aaPredicted RBP5.65□□□□□ -1.51
PTPN13-201ENST00000316707 CLIP2Q9UDT6 1046 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 TSPYL4Q9UJ04 414 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 SNX14Q9Y5W7 946 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 POGZQ7Z3K3 1410 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 SURF6O75683 361 aaKnown RBP5.65□□□□□ -1.51
PTPN13-201ENST00000316707 RBM6P78332 1123 aaKnown RBP5.65□□□□□ -1.51
PTPN13-201ENST00000316707 SULT6B1Q6IMI4 303 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 RHPN1Q8TCX5 695 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 CHAMP1Q96JM3 812 aa5.65□□□□□ -1.51
PTPN13-201ENST00000316707 GJB2P29033 226 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 KCNJ4P48050 445 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 CEP135Q66GS9 1140 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 C17orf53Q8N3J3 647 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-201ENST00000316707 MPNDQ8N594 471 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 SPC24Q8NBT2 197 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 WASLO00401 505 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-201ENST00000316707 FOXD4L6Q3SYB3 417 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-201ENST00000316707 FOXD4L3Q6VB84 417 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-201ENST00000316707 CCDC73Q6ZRK6 1079 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 ARHGEF40Q8TER5 1519 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 SPDYE4A6NLX3 237 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 DNM1Q05193 864 aaKnown RBP5.64□□□□□ -1.51
PTPN13-201ENST00000316707 ALDH8A1Q9H2A2 487 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-201ENST00000316707 ZSCAN16Q9H4T2 348 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-201ENST00000316707 MAP3K5Q99683 1374 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 HMG20BQ9P0W2 317 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 BICD2Q8TD16 824 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 KCND1Q9NSA2 647 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 DACT1Q9NYF0 836 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 V9GYY5 206 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-201ENST00000316707 RUFY3Q7L099 469 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 TTC6Q86TZ1 520 aa5.64□□□□□ -1.51
PTPN13-201ENST00000316707 KCNF1Q9H3M0 494 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms