RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 ZFYVE9O95405 1425 aa15.22■□□□□ 0.03
RETREG3-201ENST00000309428 AACSQ86V21 672 aa15.22■□□□□ 0.03
RETREG3-201ENST00000309428 RAPGEF4Q8WZA2 1011 aa15.22■□□□□ 0.03
RETREG3-201ENST00000309428 NEUROD6Q96NK8 337 aa15.22■□□□□ 0.03
RETREG3-201ENST00000309428 USP26Q9BXU7 913 aa15.22■□□□□ 0.03
RETREG3-201ENST00000309428 ANKLE2Q86XL3 938 aa15.21■□□□□ 0.03
RETREG3-201ENST00000309428 ARHGEF40Q8TER5 1519 aa15.21■□□□□ 0.02
RETREG3-201ENST00000309428 HSPA2P54652 639 aa15.21■□□□□ 0.02
RETREG3-201ENST00000309428 EDC3Q96F86 508 aaKnown RBP15.21■□□□□ 0.02
RETREG3-201ENST00000309428 RTL1A6NKG5 1358 aa15.21■□□□□ 0.02
RETREG3-201ENST00000309428 SMC3Q9UQE7 1217 aa15.2■□□□□ 0.02
RETREG3-201ENST00000309428 OFD1O75665 1012 aa15.2■□□□□ 0.02
RETREG3-201ENST00000309428 MBD3O95983 291 aa15.2■□□□□ 0.02
RETREG3-201ENST00000309428 CEBPZQ03701 1054 aaKnown RBP15.2■□□□□ 0.02
RETREG3-201ENST00000309428 KIF2CQ99661 725 aa15.2■□□□□ 0.02
RETREG3-201ENST00000309428 RBM25P49756 843 aaKnown RBP15.19■□□□□ 0.02
RETREG3-201ENST00000309428 PRPF40BQ6NWY9 871 aaKnown RBP15.19■□□□□ 0.02
RETREG3-201ENST00000309428 CLASRPQ8N2M8 674 aaKnown RBP15.19■□□□□ 0.02
RETREG3-201ENST00000309428 DNAAF4Q8WXU2 420 aa15.19■□□□□ 0.02
RETREG3-201ENST00000309428 PPLO60437 1756 aa15.18■□□□□ 0.02
RETREG3-201ENST00000309428 FLT4P35916 1363 aa15.18■□□□□ 0.02
RETREG3-201ENST00000309428 GOLGA6L6A8MZA4 724 aa15.18■□□□□ 0.02
RETREG3-201ENST00000309428 HCLS1P14317 486 aaPredicted RBP15.18■□□□□ 0.02
RETREG3-201ENST00000309428 NECAB1Q8N987 351 aa15.18■□□□□ 0.02
RETREG3-201ENST00000309428 ANKRD24Q8TF21 1146 aa15.18■□□□□ 0.02
RETREG3-201ENST00000309428 TMX3Q96JJ7 454 aa15.18■□□□□ 0.02
RETREG3-201ENST00000309428 USP44Q9H0E7 712 aa15.18■□□□□ 0.02
RETREG3-201ENST00000309428 PNPLA6Q8IY17 1366 aa15.18■□□□□ 0.02
RETREG3-201ENST00000309428 MYO3AQ8NEV4 1616 aa15.18■□□□□ 0.02
RETREG3-201ENST00000309428 ZC3H13Q5T200 1668 aaKnown RBP15.18■□□□□ 0.02
RETREG3-201ENST00000309428 HSP90B1P14625 803 aaKnown RBP15.18■□□□□ 0.02
RETREG3-201ENST00000309428 G3BP1Q13283 466 aaKnown RBP eCLIP15.18■□□□□ 0.02
RETREG3-201ENST00000309428 CAMK4Q16566 473 aa15.18■□□□□ 0.02
RETREG3-201ENST00000309428 CCDC83Q8IWF9 413 aa15.17■□□□□ 0.02
RETREG3-201ENST00000309428 TTC5Q8N0Z6 440 aa15.17■□□□□ 0.02
RETREG3-201ENST00000309428 FSD1Q9BTV5 496 aa15.17■□□□□ 0.02
RETREG3-201ENST00000309428 CASTP20810 708 aaKnown RBP15.17■□□□□ 0.02
RETREG3-201ENST00000309428 PLEKHO1Q53GL0 409 aaPredicted RBP15.17■□□□□ 0.02
RETREG3-201ENST00000309428 STK11IPQ8N1F8 1099 aa15.17■□□□□ 0.02
RETREG3-201ENST00000309428 NFATC2IPQ8NCF5 419 aa15.17■□□□□ 0.02
RETREG3-201ENST00000309428 RHPN1Q8TCX5 695 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 BICD2Q8TD16 824 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 TRERF1Q96PN7 1200 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 MYD88Q99836 296 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 LRRC2Q9BYS8 371 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 PPP4R3BQ5MIZ7 849 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 JAKMIP1Q96N16 626 aaKnown RBP15.16■□□□□ 0.02
RETREG3-201ENST00000309428 PTPRCP08575 1304 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 SASS6Q6UVJ0 657 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 LMTK2Q8IWU2 1503 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 TRIM5Q9C035 493 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 IL25Q9H293 177 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 AK9Q5TCS8 1911 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 SHPRHQ149N8 1683 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 SETBP1Q9Y6X0 1596 aa15.16■□□□□ 0.02
RETREG3-201ENST00000309428 SOS1Q07889 1333 aaPredicted RBP15.15■□□□□ 0.02
RETREG3-201ENST00000309428 GCP02774 474 aa15.15■□□□□ 0.02
RETREG3-201ENST00000309428 FAM173BQ6P4H8 233 aa15.15■□□□□ 0.02
RETREG3-201ENST00000309428 PLEKHG3A1L390 1219 aa15.15■□□□□ 0.02
RETREG3-201ENST00000309428 KIF3AQ9Y496 699 aa15.15■□□□□ 0.02
RETREG3-201ENST00000309428 MAP2P11137 1827 aaKnown RBP15.15■□□□□ 0.02
RETREG3-201ENST00000309428 ESYT1Q9BSJ8 1104 aa15.15■□□□□ 0.02
RETREG3-201ENST00000309428 ZKSCAN5Q9Y2L8 839 aa15.15■□□□□ 0.02
RETREG3-201ENST00000309428 ARHGEF28Q8N1W1 1705 aaKnown RBP15.15■□□□□ 0.02
RETREG3-201ENST00000309428 RAB11FIP4Q86YS3 637 aa15.14■□□□□ 0.01
RETREG3-201ENST00000309428 CWC22Q9HCG8 908 aaKnown RBP15.14■□□□□ 0.01
RETREG3-201ENST00000309428 CLTCQ00610 1675 aaKnown RBP15.14■□□□□ 0.01
RETREG3-201ENST00000309428 KRT28Q7Z3Y7 464 aa15.14■□□□□ 0.01
RETREG3-201ENST00000309428 SNX21Q969T3 373 aa15.14■□□□□ 0.01
RETREG3-201ENST00000309428 ZBTB9Q96C00 473 aa15.14■□□□□ 0.01
RETREG3-201ENST00000309428 NSFL1CQ9UNZ2 370 aaKnown RBP15.14■□□□□ 0.01
RETREG3-201ENST00000309428 ATF3P18847 181 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 PDCL2Q8N4E4 241 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 ERICH4A6NGS2 130 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 ATP8B2P98198 1209 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 ZBTB3Q9H5J0 574 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 ARHGAP31Q2M1Z3 1444 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 BECN2A8MW95 431 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 ADCY5O95622 1261 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 CHGBP05060 677 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 UBE3BQ7Z3V4 1068 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 DDX11Q96FC9 970 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 PIK3R4Q99570 1358 aa15.13■□□□□ 0.01
RETREG3-201ENST00000309428 CHMLP26374 656 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 NEXNQ0ZGT2 675 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 GIMAP6Q6P9H5 292 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 CHMP4CQ96CF2 233 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 USP6P35125 1406 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 CCAR2Q8N163 923 aaKnown RBP15.12■□□□□ 0.01
RETREG3-201ENST00000309428 GOLGA6L19H0YKK7 550 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 HSP90AB3PQ58FF7 597 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 GORABQ5T7V8 394 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 COPS6Q7L5N1 327 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 CNTROBQ8N137 903 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 C16orf45Q96MC5 204 aaPredicted RBP15.12■□□□□ 0.01
RETREG3-201ENST00000309428 FMNL2Q96PY5 1086 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 AXIN2Q9Y2T1 843 aa15.12■□□□□ 0.01
RETREG3-201ENST00000309428 COL3A1P02461 1466 aaPredicted RBP15.12■□□□□ 0.01
RETREG3-201ENST00000309428 MTERF4Q7Z6M4 381 aaKnown RBP15.11■□□□□ 0.01
RETREG3-201ENST00000309428 NLRP1Q9C000 1473 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms