RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 GBP2P32456 591 aaPredicted RBP20.17■□□□□ 0.82
SYNPO-201ENST00000307662 MAP2K1Q02750 393 aaPredicted RBP20.17■□□□□ 0.82
SYNPO-201ENST00000307662 DYDC1Q8WWB3 177 aa20.17■□□□□ 0.82
SYNPO-201ENST00000307662 C8orf76Q96K31 380 aa20.17■□□□□ 0.82
SYNPO-201ENST00000307662 ZNF165P49910 485 aa20.17■□□□□ 0.82
SYNPO-201ENST00000307662 NOLC1Q14978 699 aaKnown RBP eCLIP20.17■□□□□ 0.82
SYNPO-201ENST00000307662 RAI14Q9P0K7 980 aa20.17■□□□□ 0.82
SYNPO-201ENST00000307662 CCDC171Q6TFL3 1326 aa20.16■□□□□ 0.82
SYNPO-201ENST00000307662 HMGB1P09429 215 aaKnown RBP20.16■□□□□ 0.82
SYNPO-201ENST00000307662 GJB2P29033 226 aa20.16■□□□□ 0.82
SYNPO-201ENST00000307662 PROSER2Q86WR7 435 aaPredicted RBP20.16■□□□□ 0.82
SYNPO-201ENST00000307662 PANK2Q9BZ23 570 aa20.16■□□□□ 0.82
SYNPO-201ENST00000307662 LMAN1P49257 510 aa20.16■□□□□ 0.82
SYNPO-201ENST00000307662 KLHL10Q6JEL2 608 aa20.16■□□□□ 0.82
SYNPO-201ENST00000307662 FSIP1Q8NA03 581 aa20.16■□□□□ 0.82
SYNPO-201ENST00000307662 RPRD2Q5VT52 1461 aaKnown RBP20.16■□□□□ 0.82
SYNPO-201ENST00000307662 RRS1Q15050 365 aaKnown RBP20.16■□□□□ 0.82
SYNPO-201ENST00000307662 THUMPD2Q9BTF0 503 aaKnown RBP20.15■□□□□ 0.82
SYNPO-201ENST00000307662 CCDC150Q8NCX0 1101 aa20.15■□□□□ 0.82
SYNPO-201ENST00000307662 RNF187Q5TA31 235 aaPredicted RBP20.15■□□□□ 0.82
SYNPO-201ENST00000307662 SSBP05455 408 aaKnown RBP eCLIP20.15■□□□□ 0.82
SYNPO-201ENST00000307662 FKBP15Q5T1M5 1219 aa20.15■□□□□ 0.82
SYNPO-201ENST00000307662 CCDC61Q9Y6R9 512 aa20.15■□□□□ 0.82
SYNPO-201ENST00000307662 HCLS1P14317 486 aaPredicted RBP20.14■□□□□ 0.82
SYNPO-201ENST00000307662 DDX54Q8TDD1 881 aaKnown RBP20.14■□□□□ 0.81
SYNPO-201ENST00000307662 ZKSCAN5Q9Y2L8 839 aa20.14■□□□□ 0.81
SYNPO-201ENST00000307662 BTBD11A6QL63 1104 aa20.14■□□□□ 0.81
SYNPO-201ENST00000307662 KIF14Q15058 1648 aa20.14■□□□□ 0.81
SYNPO-201ENST00000307662 PAFAH1B1P43034 410 aa20.13■□□□□ 0.81
SYNPO-201ENST00000307662 TMX1Q9H3N1 280 aa20.13■□□□□ 0.81
SYNPO-201ENST00000307662 LUZP1Q86V48 1076 aa20.13■□□□□ 0.81
SYNPO-201ENST00000307662 YEATS4O95619 227 aa20.13■□□□□ 0.81
SYNPO-201ENST00000307662 RBM42Q9BTD8 480 aaKnown RBP20.13■□□□□ 0.81
SYNPO-201ENST00000307662 IBSPP21815 317 aaPredicted RBP20.13■□□□□ 0.81
SYNPO-201ENST00000307662 NUP88Q99567 741 aaPredicted RBP20.13■□□□□ 0.81
SYNPO-201ENST00000307662 NUDT16Q96DE0 195 aaKnown RBP20.12■□□□□ 0.81
SYNPO-201ENST00000307662 CTR9Q6PD62 1173 aa20.12■□□□□ 0.81
SYNPO-201ENST00000307662 USO1O60763 962 aaKnown RBP20.12■□□□□ 0.81
SYNPO-201ENST00000307662 CABP4P57796 275 aa20.12■□□□□ 0.81
SYNPO-201ENST00000307662 GUCY1B3Q02153 619 aa20.12■□□□□ 0.81
SYNPO-201ENST00000307662 CNNM3Q8NE01 707 aa20.12■□□□□ 0.81
SYNPO-201ENST00000307662 TMEM132AQ24JP5 1023 aa20.12■□□□□ 0.81
SYNPO-201ENST00000307662 TFIP11Q9UBB9 837 aaKnown RBP20.12■□□□□ 0.81
SYNPO-201ENST00000307662 GPATCH11Q8N954 259 aa20.11■□□□□ 0.81
SYNPO-201ENST00000307662 BOLA2Q9H3K6 86 aa20.11■□□□□ 0.81
SYNPO-201ENST00000307662 GRIN2AQ12879 1464 aa20.11■□□□□ 0.81
SYNPO-201ENST00000307662 TTC22Q5TAA0 569 aa20.11■□□□□ 0.81
SYNPO-201ENST00000307662 CPLX3Q8WVH0 158 aa20.11■□□□□ 0.81
SYNPO-201ENST00000307662 ZNF830Q96NB3 372 aaPredicted RBP20.11■□□□□ 0.81
SYNPO-201ENST00000307662 GNAT3A8MTJ3 354 aa20.11■□□□□ 0.81
SYNPO-201ENST00000307662 IFFO1Q0D2I5 559 aa20.11■□□□□ 0.81
SYNPO-201ENST00000307662 CNKSR2Q8WXI2 1034 aa20.1■□□□□ 0.81
SYNPO-201ENST00000307662 AIDAQ96BJ3 306 aa20.1■□□□□ 0.81
SYNPO-201ENST00000307662 CCDC113Q9H0I3 377 aa20.1■□□□□ 0.81
SYNPO-201ENST00000307662 PHAXQ9H814 394 aaKnown RBP20.1■□□□□ 0.81
SYNPO-201ENST00000307662 PEG3Q9GZU2 1588 aa20.1■□□□□ 0.81
SYNPO-201ENST00000307662 HS1BP3Q53T59 392 aa20.1■□□□□ 0.81
SYNPO-201ENST00000307662 GIMAP6Q6P9H5 292 aa20.09■□□□□ 0.81
SYNPO-201ENST00000307662 MPHOSPH8Q99549 860 aa20.09■□□□□ 0.81
SYNPO-201ENST00000307662 GTPBP4Q9BZE4 634 aaKnown RBP20.09■□□□□ 0.81
SYNPO-201ENST00000307662 MCM10Q7L590 875 aa20.09■□□□□ 0.81
SYNPO-201ENST00000307662 MIS18AQ9NYP9 233 aa20.09■□□□□ 0.81
SYNPO-201ENST00000307662 CACNA2D4Q7Z3S7 1137 aa20.09■□□□□ 0.81
SYNPO-201ENST00000307662 LARP6Q9BRS8 491 aaKnown RBP20.09■□□□□ 0.81
SYNPO-201ENST00000307662 ATP2B2Q01814 1243 aa20.09■□□□□ 0.81
SYNPO-201ENST00000307662 C8orf34Q49A92 452 aa20.09■□□□□ 0.81
SYNPO-201ENST00000307662 IDH1O75874 414 aaKnown RBP20.08■□□□□ 0.81
SYNPO-201ENST00000307662 HDAC1Q13547 482 aaPredicted RBP20.08■□□□□ 0.81
SYNPO-201ENST00000307662 SNX21Q969T3 373 aa20.08■□□□□ 0.81
SYNPO-201ENST00000307662 SPG7Q9UQ90 795 aa20.08■□□□□ 0.81
SYNPO-201ENST00000307662 TMX3Q96JJ7 454 aa20.08■□□□□ 0.81
SYNPO-201ENST00000307662 BIN1O00499 593 aa20.08■□□□□ 0.8
SYNPO-201ENST00000307662 ZSCAN22P10073 491 aaPredicted RBP20.08■□□□□ 0.8
SYNPO-201ENST00000307662 GNG11P61952 73 aa20.08■□□□□ 0.8
SYNPO-201ENST00000307662 TICAM2Q86XR7 235 aa20.08■□□□□ 0.8
SYNPO-201ENST00000307662 CCDC94Q9BW85 323 aaPredicted RBP20.08■□□□□ 0.8
SYNPO-201ENST00000307662 NUCB1Q02818 461 aa20.08■□□□□ 0.8
SYNPO-201ENST00000307662 CCDC178Q5BJE1 867 aa20.08■□□□□ 0.8
SYNPO-201ENST00000307662 BIVM-ERCC5R4GMW8 1640 aa20.07■□□□□ 0.8
SYNPO-201ENST00000307662 GOLGA6L10A0A0M3HER8 536 aa20.07■□□□□ 0.8
SYNPO-201ENST00000307662 CCDC196A0A1B0GTZ2 297 aa20.07■□□□□ 0.8
SYNPO-201ENST00000307662 CCDC91Q7Z6B0 441 aa20.07■□□□□ 0.8
SYNPO-201ENST00000307662 PTPRCP08575 1304 aa20.07■□□□□ 0.8
SYNPO-201ENST00000307662 IPO4Q8TEX9 1081 aaKnown RBP20.07■□□□□ 0.8
SYNPO-201ENST00000307662 CCDC12Q8WUD4 166 aaPredicted RBP20.07■□□□□ 0.8
SYNPO-201ENST00000307662 SMC1AQ14683 1233 aaKnown RBP20.07■□□□□ 0.8
SYNPO-201ENST00000307662 NAA15Q9BXJ9 866 aaKnown RBP20.07■□□□□ 0.8
SYNPO-201ENST00000307662 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.06■□□□□ 0.8
SYNPO-201ENST00000307662 TSG101Q99816 390 aa20.06■□□□□ 0.8
SYNPO-201ENST00000307662 BCCIPQ9P287 314 aaKnown RBP eCLIP20.06■□□□□ 0.8
SYNPO-201ENST00000307662 GCOM1H8Y6P7 765 aaPredicted RBP20.06■□□□□ 0.8
SYNPO-201ENST00000307662 MYZAPP0CAP1 466 aa20.06■□□□□ 0.8
SYNPO-201ENST00000307662 PIBF1Q8WXW3 757 aa20.06■□□□□ 0.8
SYNPO-201ENST00000307662 EVI5LQ96CN4 794 aa20.06■□□□□ 0.8
SYNPO-201ENST00000307662 ALS2CR12Q96Q35 445 aa20.06■□□□□ 0.8
SYNPO-201ENST00000307662 FAM200AQ8TCP9 573 aa20.05■□□□□ 0.8
SYNPO-201ENST00000307662 IVLP07476 585 aa20.05■□□□□ 0.8
SYNPO-201ENST00000307662 VPS36Q86VN1 386 aa20.05■□□□□ 0.8
SYNPO-201ENST00000307662 ADGRF5Q8IZF2 1346 aa20.05■□□□□ 0.8
SYNPO-201ENST00000307662 SKILP12757 684 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms