RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 BICD2Q8TD16 824 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 SREK1Q8WXA9 508 aaKnown RBP4.69□□□□□ -1.66
USH2A-201ENST00000307340 SIN3AQ96ST3 1273 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 EHMT1Q9H9B1 1298 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 G3V3G9 751 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 DCAF8Q5TAQ9 597 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 BICDL1Q6ZP65 573 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 CNNM2Q9H8M5 875 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 KIAA0754O94854 1291 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 HYPKQ9NX55 129 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 USO1O60763 962 aaKnown RBP4.69□□□□□ -1.66
USH2A-201ENST00000307340 PPFIA3O75145 1194 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 PRDM15P57071 1507 aaPredicted RBP4.69□□□□□ -1.66
USH2A-201ENST00000307340 PIP4K2BP78356 416 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 SPAG1Q07617 926 aa4.69□□□□□ -1.66
USH2A-201ENST00000307340 ZNF713Q8N859 430 aaPredicted RBP4.68□□□□□ -1.66
USH2A-201ENST00000307340 ANKRD18BA2A2Z9 1011 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 KIF5BP33176 963 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 MYOM2P54296 1465 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 CCDC50Q8IVM0 306 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 ARMC9Q7Z3E5 817 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 VIMP08670 466 aaKnown RBP4.68□□□□□ -1.66
USH2A-201ENST00000307340 APOBRQ0VD83 1088 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 TNIP1Q15025 636 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 TTC14Q96N46 770 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 NAP1L3Q99457 506 aaPredicted RBP4.68□□□□□ -1.66
USH2A-201ENST00000307340 TSPY26PQ9H489 355 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 HECW2Q9P2P5 1572 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 TTC41PQ6P2S7 1318 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 RIPK4P57078 832 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 WASHC4Q2M389 1173 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 FILIP1Q7Z7B0 1213 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 PARD3Q8TEW0 1356 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 STARD3NLO95772 234 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 KIF6Q6ZMV9 814 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 CCDC43Q96MW1 224 aaKnown RBP4.68□□□□□ -1.66
USH2A-201ENST00000307340 TARBP1Q13395 1621 aaKnown RBP4.68□□□□□ -1.66
USH2A-201ENST00000307340 CCDC150Q8NCX0 1101 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 OFD1O75665 1012 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.68□□□□□ -1.66
USH2A-201ENST00000307340 ARHGEF40Q8TER5 1519 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 CD109Q6YHK3 1445 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 CCDC148Q8NFR7 591 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 NAP1L4Q99733 375 aaKnown RBP4.68□□□□□ -1.66
USH2A-201ENST00000307340 NUCKS1Q9H1E3 243 aaKnown RBP4.68□□□□□ -1.66
USH2A-201ENST00000307340 ATP7AQ04656 1500 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 FBXO3Q9UK99 471 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 ATF3P18847 181 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 GGT6Q6P531 493 aa4.68□□□□□ -1.66
USH2A-201ENST00000307340 BMS1Q14692 1282 aaKnown RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 ANKRD24Q8TF21 1146 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 SWAP70Q9UH65 585 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 TRIM14Q14142 442 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 PPP1R2P3Q6NXS1 205 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 FAM114A2Q9NRY5 505 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 ANO10Q9NW15 660 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 UBE2HP62256 183 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 BRPF1P55201 1214 aaPredicted RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 SPC24Q8NBT2 197 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 FRAT2O75474 233 aaPredicted RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 PPP1R1BQ9UD71 204 aaPredicted RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 A0A087WZG4 1122 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 B4DLN1 442 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 MRPL12P52815 198 aaKnown RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 FEZ2Q9UHY8 353 aaPredicted RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 SALL2Q9Y467 1007 aaPredicted RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 USP32Q8NFA0 1604 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 RGS12O14924 1447 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 KLHL40Q2TBA0 621 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 SPECC1LQ69YQ0 1117 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.67□□□□□ -1.66
USH2A-201ENST00000307340 H0YHG0 523 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 WDHD1O75717 1129 aaPredicted RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 FKBP5Q13451 457 aaPredicted RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 GNAQP50148 359 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 LLPHQ9BRT6 129 aaKnown RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 ATP7BP35670 1465 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 COL17A1Q9UMD9 1497 aaPredicted RBP4.67□□□□□ -1.66
USH2A-201ENST00000307340 ELP1O95163 1332 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 SFPQP23246 707 aaKnown RBP eCLIP4.67□□□□□ -1.66
USH2A-201ENST00000307340 CCDC91Q7Z6B0 441 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 A2ML1A8K2U0 1454 aa4.67□□□□□ -1.66
USH2A-201ENST00000307340 ATP5DP30049 168 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 SPATA24Q86W54 205 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 KCNG4Q8TDN1 519 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 EVI5LQ96CN4 794 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 ABCC5O15440 1437 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 PPFIBP1Q86W92 1011 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 CTCFLQ8NI51 663 aaPredicted RBP4.66□□□□□ -1.66
USH2A-201ENST00000307340 ADGRL3Q9HAR2 1447 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 MED14O60244 1454 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 SLC17A8Q8NDX2 589 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 ALS2CR12Q96Q35 445 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 TMOD4Q9NZQ9 345 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 CEP83Q9Y592 693 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 MARCH6O60337 910 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 PRAG1Q86YV5 1406 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 PLEKHG1Q9ULL1 1385 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 SNX16P57768 344 aa4.66□□□□□ -1.66
USH2A-201ENST00000307340 CKAP4Q07065 602 aaKnown RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms