RNA–Protein interactions for RNA: ENST00000257262.12

TMEM258-201, Transcript of transmembrane protein 258, humanhuman

TSL 3

Gene TMEM258, Length 468 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM258-201ENST00000257262 KCPQ6ZWJ8 1503 aa11.27□□□□□ -0.61
TMEM258-201ENST00000257262 SMIM5Q71RC9 77 aa11.27□□□□□ -0.61
TMEM258-201ENST00000257262 COL23A1Q86Y22 540 aaPredicted RBP11.27□□□□□ -0.61
TMEM258-201ENST00000257262 AK7Q96M32 723 aa11.27□□□□□ -0.61
TMEM258-201ENST00000257262 BTBD11A6QL63 1104 aa11.26□□□□□ -0.61
TMEM258-201ENST00000257262 RIPK4P57078 832 aa11.26□□□□□ -0.61
TMEM258-201ENST00000257262 ZNF790Q6PG37 636 aa11.26□□□□□ -0.61
TMEM258-201ENST00000257262 AMIGO3Q86WK7 504 aa11.26□□□□□ -0.61
TMEM258-201ENST00000257262 TTC5Q8N0Z6 440 aa11.26□□□□□ -0.61
TMEM258-201ENST00000257262 RUNDC1Q96C34 613 aa11.26□□□□□ -0.61
TMEM258-201ENST00000257262 CICQ96RK0 1608 aaPredicted RBP11.26□□□□□ -0.61
TMEM258-201ENST00000257262 GNPATO15228 680 aa11.25□□□□□ -0.61
TMEM258-201ENST00000257262 KCNQ3O43525 872 aa11.25□□□□□ -0.61
TMEM258-201ENST00000257262 PHF14O94880 888 aa11.25□□□□□ -0.61
TMEM258-201ENST00000257262 TMPOP42166 694 aaKnown RBP11.25□□□□□ -0.61
TMEM258-201ENST00000257262 EVX2Q03828 476 aa11.25□□□□□ -0.61
TMEM258-201ENST00000257262 RC3H1Q5TC82 1133 aaKnown RBP11.25□□□□□ -0.61
TMEM258-201ENST00000257262 DNAJC10Q8IXB1 793 aa11.25□□□□□ -0.61
TMEM258-201ENST00000257262 FLAD1Q8NFF5 587 aa11.25□□□□□ -0.61
TMEM258-201ENST00000257262 SLC16A10Q8TF71 515 aa11.25□□□□□ -0.61
TMEM258-201ENST00000257262 MTFR1LQ9H019 292 aa11.25□□□□□ -0.61
TMEM258-201ENST00000257262 COL24A1Q17RW2 1714 aa11.24□□□□□ -0.61
TMEM258-201ENST00000257262 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.24□□□□□ -0.61
TMEM258-201ENST00000257262 PTGER2P43116 358 aa11.24□□□□□ -0.61
TMEM258-201ENST00000257262 TAF7Q15545 349 aaPredicted RBP11.24□□□□□ -0.61
TMEM258-201ENST00000257262 NEUROD2Q15784 382 aa11.24□□□□□ -0.61
TMEM258-201ENST00000257262 ZNF496Q96IT1 587 aaPredicted RBP11.24□□□□□ -0.61
TMEM258-201ENST00000257262 THUMPD2Q9BTF0 503 aaKnown RBP11.24□□□□□ -0.61
TMEM258-201ENST00000257262 RRP7AQ9Y3A4 280 aaKnown RBP11.24□□□□□ -0.61
TMEM258-201ENST00000257262 MYH14Q7Z406 1995 aaKnown RBP11.24□□□□□ -0.61
TMEM258-201ENST00000257262 SSFA2P28290 1259 aa11.23□□□□□ -0.61
TMEM258-201ENST00000257262 CRKLP46109 303 aaKnown RBP11.23□□□□□ -0.61
TMEM258-201ENST00000257262 VSIG10Q8N0Z9 540 aa11.23□□□□□ -0.61
TMEM258-201ENST00000257262 SGIP1Q9BQI5 828 aa11.23□□□□□ -0.61
TMEM258-201ENST00000257262 MRS2Q9HD23 443 aa11.23□□□□□ -0.61
TMEM258-201ENST00000257262 MIS18AQ9NYP9 233 aa11.23□□□□□ -0.61
TMEM258-201ENST00000257262 PPP1R1BQ9UD71 204 aaPredicted RBP11.23□□□□□ -0.61
TMEM258-201ENST00000257262 RTCBQ9Y3I0 505 aaKnown RBP11.23□□□□□ -0.61
TMEM258-201ENST00000257262 CNTNAP4Q9C0A0 1308 aa11.23□□□□□ -0.61
TMEM258-201ENST00000257262 RPS6KA4O75676 772 aa11.22□□□□□ -0.61
TMEM258-201ENST00000257262 CYP19A1P11511 503 aaPredicted RBP11.22□□□□□ -0.61
TMEM258-201ENST00000257262 CD44P16070 742 aaKnown RBP11.22□□□□□ -0.61
TMEM258-201ENST00000257262 TRAPPC3LQ5T215 181 aa11.22□□□□□ -0.61
TMEM258-201ENST00000257262 INTS5Q6P9B9 1019 aaKnown RBP11.22□□□□□ -0.61
TMEM258-201ENST00000257262 PNISRQ8TF01 805 aaKnown RBP11.22□□□□□ -0.61
TMEM258-201ENST00000257262 FMNL2Q96PY5 1086 aa11.22□□□□□ -0.61
TMEM258-201ENST00000257262 HEG1Q9ULI3 1381 aa11.22□□□□□ -0.61
TMEM258-201ENST00000257262 KDM3BQ7LBC6 1761 aa11.21□□□□□ -0.61
TMEM258-201ENST00000257262 ARHGEF1Q92888 912 aaKnown RBP11.21□□□□□ -0.61
TMEM258-201ENST00000257262 TRIM35Q9UPQ4 493 aa11.21□□□□□ -0.61
TMEM258-201ENST00000257262 APAF1O14727 1248 aa11.2□□□□□ -0.62
TMEM258-201ENST00000257262 LMOD3Q0VAK6 560 aa11.2□□□□□ -0.62
TMEM258-201ENST00000257262 MSL1Q68DK7 614 aa11.2□□□□□ -0.62
TMEM258-201ENST00000257262 TEX13AQ9BXU3 409 aaPredicted RBP11.2□□□□□ -0.62
TMEM258-201ENST00000257262 CCDC87Q9NVE4 849 aa11.2□□□□□ -0.62
TMEM258-201ENST00000257262 C4AP0C0L4 1744 aa11.19□□□□□ -0.62
TMEM258-201ENST00000257262 PRAMEF22A3QJZ6 481 aa11.19□□□□□ -0.62
TMEM258-201ENST00000257262 STARD3NLO95772 234 aa11.19□□□□□ -0.62
TMEM258-201ENST00000257262 POLD1P28340 1107 aa11.19□□□□□ -0.62
TMEM258-201ENST00000257262 RFC4P35249 363 aa11.19□□□□□ -0.62
TMEM258-201ENST00000257262 ARXQ96QS3 562 aa11.19□□□□□ -0.62
TMEM258-201ENST00000257262 USP16Q9Y5T5 823 aa11.19□□□□□ -0.62
TMEM258-201ENST00000257262 SENP3-EIF4A1A0A087X0R7 540 aa11.18□□□□□ -0.62
TMEM258-201ENST00000257262 SNRPA1P09661 255 aaKnown RBP11.18□□□□□ -0.62
TMEM258-201ENST00000257262 CANXP27824 592 aaKnown RBP11.18□□□□□ -0.62
TMEM258-201ENST00000257262 ZBTB1Q9Y2K1 713 aa11.18□□□□□ -0.62
TMEM258-201ENST00000257262 A1BGP04217 495 aa11.17□□□□□ -0.62
TMEM258-201ENST00000257262 YY1P25490 414 aa11.17□□□□□ -0.62
TMEM258-201ENST00000257262 EIF4A1P60842 406 aaKnown RBP11.17□□□□□ -0.62
TMEM258-201ENST00000257262 FHDC1Q9C0D6 1143 aaPredicted RBP11.17□□□□□ -0.62
TMEM258-201ENST00000257262 SOS1Q07889 1333 aaPredicted RBP11.16□□□□□ -0.62
TMEM258-201ENST00000257262 GYS1P13807 737 aa11.16□□□□□ -0.62
TMEM258-201ENST00000257262 FAM9BQ8IZU0 186 aa11.16□□□□□ -0.62
TMEM258-201ENST00000257262 SRP68Q9UHB9 627 aaKnown RBP11.16□□□□□ -0.62
TMEM258-201ENST00000257262 TSPYL4Q9UJ04 414 aa11.16□□□□□ -0.62
TMEM258-201ENST00000257262 LAS1LQ9Y4W2 734 aaKnown RBP11.16□□□□□ -0.62
TMEM258-201ENST00000257262 LAMB4A4D0S4 1761 aa11.16□□□□□ -0.62
TMEM258-201ENST00000257262 USP42Q9H9J4 1324 aaKnown RBP11.15□□□□□ -0.62
TMEM258-201ENST00000257262 GIGYF1O75420 1035 aaPredicted RBP11.15□□□□□ -0.62
TMEM258-201ENST00000257262 PIP4K2AP48426 406 aaPredicted RBP11.15□□□□□ -0.62
TMEM258-201ENST00000257262 MNX1P50219 401 aaPredicted RBP11.15□□□□□ -0.62
TMEM258-201ENST00000257262 EIF5P55010 431 aaKnown RBP11.15□□□□□ -0.62
TMEM258-201ENST00000257262 USPL1Q5W0Q7 1092 aa11.15□□□□□ -0.62
TMEM258-201ENST00000257262 KLHL34Q8N239 644 aa11.15□□□□□ -0.62
TMEM258-201ENST00000257262 NLGN1Q8N2Q7 840 aa11.15□□□□□ -0.62
TMEM258-201ENST00000257262 SYT17Q9BSW7 474 aa11.15□□□□□ -0.62
TMEM258-201ENST00000257262 BABAM1Q9NWV8 329 aa11.15□□□□□ -0.62
TMEM258-201ENST00000257262 COL15A1P39059 1388 aa11.15□□□□□ -0.63
TMEM258-201ENST00000257262 CHL1O00533 1208 aa11.14□□□□□ -0.63
TMEM258-201ENST00000257262 ZPR1O75312 459 aa11.14□□□□□ -0.63
TMEM258-201ENST00000257262 IL6STP40189 918 aaPredicted RBP11.14□□□□□ -0.63
TMEM258-201ENST00000257262 NARFQ9UHQ1 456 aa11.14□□□□□ -0.63
TMEM258-201ENST00000257262 FBXO3Q9UK99 471 aa11.14□□□□□ -0.63
TMEM258-201ENST00000257262 ZNF330Q9Y3S2 320 aaPredicted RBP11.14□□□□□ -0.63
TMEM258-201ENST00000257262 NBPF26B4DH59 902 aa11.13□□□□□ -0.63
TMEM258-201ENST00000257262 MMP10P09238 476 aa11.13□□□□□ -0.63
TMEM258-201ENST00000257262 NBPF10Q6P3W6 841 aaKnown RBP11.13□□□□□ -0.63
TMEM258-201ENST00000257262 MIER1Q8N108 512 aa11.13□□□□□ -0.63
TMEM258-201ENST00000257262 NBPF15Q8N660 670 aa11.13□□□□□ -0.63
TMEM258-201ENST00000257262 CFAP44Q96MT7 982 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms