RNA–Protein interactions for RNA: ENST00000218388.8

TIMP1-201, Transcript of TIMP metallopeptidase inhibitor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP1, Length 892 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1-201ENST00000218388 HDGFL1Q5TGJ6 251 aa16.96■□□□□ 0.31
TIMP1-201ENST00000218388 TSPYL6Q8N831 410 aa16.96■□□□□ 0.31
TIMP1-201ENST00000218388 ZNF428Q96B54 188 aa16.96■□□□□ 0.31
TIMP1-201ENST00000218388 C4BP0C0L5 1744 aa16.96■□□□□ 0.3
TIMP1-201ENST00000218388 ERBB4Q15303 1308 aa16.96■□□□□ 0.3
TIMP1-201ENST00000218388 PRAMEF22A3QJZ6 481 aa16.95■□□□□ 0.3
TIMP1-201ENST00000218388 CYP19A1P11511 503 aaPredicted RBP16.95■□□□□ 0.3
TIMP1-201ENST00000218388 EIF2S2P20042 333 aaKnown RBP16.95■□□□□ 0.3
TIMP1-201ENST00000218388 CCDC30Q5VVM6 783 aa16.95■□□□□ 0.3
TIMP1-201ENST00000218388 PROM2Q8N271 834 aa16.95■□□□□ 0.3
TIMP1-201ENST00000218388 LRRC4BQ9NT99 713 aa16.95■□□□□ 0.3
TIMP1-201ENST00000218388 USP16Q9Y5T5 823 aa16.95■□□□□ 0.3
TIMP1-201ENST00000218388 NUP188Q5SRE5 1749 aa16.95■□□□□ 0.3
TIMP1-201ENST00000218388 CNTNAP4Q9C0A0 1308 aa16.95■□□□□ 0.3
TIMP1-201ENST00000218388 KCNQ4P56696 695 aa16.94■□□□□ 0.3
TIMP1-201ENST00000218388 LINC00116Q8NCU8 138 aa16.94■□□□□ 0.3
TIMP1-201ENST00000218388 STK31Q9BXU1 1019 aa16.94■□□□□ 0.3
TIMP1-201ENST00000218388 VAMP4O75379 141 aa16.93■□□□□ 0.3
TIMP1-201ENST00000218388 CRKLP46109 303 aaKnown RBP16.93■□□□□ 0.3
TIMP1-201ENST00000218388 RC3H1Q5TC82 1133 aaKnown RBP16.93■□□□□ 0.3
TIMP1-201ENST00000218388 NPM2Q86SE8 214 aaKnown RBP16.93■□□□□ 0.3
TIMP1-201ENST00000218388 AK7Q96M32 723 aa16.93■□□□□ 0.3
TIMP1-201ENST00000218388 CCDC87Q9NVE4 849 aa16.93■□□□□ 0.3
TIMP1-201ENST00000218388 CACNA1FO60840 1977 aa16.93■□□□□ 0.3
TIMP1-201ENST00000218388 NBPF14Q5TI25 921 aa16.91■□□□□ 0.3
TIMP1-201ENST00000218388 NECTIN2Q92692 538 aa16.91■□□□□ 0.3
TIMP1-201ENST00000218388 DBF4Q9UBU7 674 aaPredicted RBP16.91■□□□□ 0.3
TIMP1-201ENST00000218388 MYH14Q7Z406 1995 aaKnown RBP16.9■□□□□ 0.3
TIMP1-201ENST00000218388 GNPATO15228 680 aa16.9■□□□□ 0.3
TIMP1-201ENST00000218388 STK32BQ9NY57 414 aa16.9■□□□□ 0.3
TIMP1-201ENST00000218388 ZBTB1Q9Y2K1 713 aa16.9■□□□□ 0.3
TIMP1-201ENST00000218388 A1BGP04217 495 aa16.89■□□□□ 0.29
TIMP1-201ENST00000218388 CANXP27824 592 aaKnown RBP16.89■□□□□ 0.29
TIMP1-201ENST00000218388 ALDH1L2Q3SY69 923 aa16.89■□□□□ 0.29
TIMP1-201ENST00000218388 DDX21Q9NR30 783 aaKnown RBP eCLIP16.89■□□□□ 0.29
TIMP1-201ENST00000218388 HYPKQ9NX55 129 aa16.89■□□□□ 0.29
TIMP1-201ENST00000218388 CHPF2Q9P2E5 772 aa16.89■□□□□ 0.29
TIMP1-201ENST00000218388 RTCBQ9Y3I0 505 aaKnown RBP16.89■□□□□ 0.29
TIMP1-201ENST00000218388 RPS6KA4O75676 772 aa16.88■□□□□ 0.29
TIMP1-201ENST00000218388 IL6STP40189 918 aaPredicted RBP16.88■□□□□ 0.29
TIMP1-201ENST00000218388 INTS5Q6P9B9 1019 aaKnown RBP16.88■□□□□ 0.29
TIMP1-201ENST00000218388 UBR3Q6ZT12 1888 aa16.88■□□□□ 0.29
TIMP1-201ENST00000218388 A0A087WZG4 1122 aa16.87■□□□□ 0.29
TIMP1-201ENST00000218388 MYL6BP14649 208 aa16.87■□□□□ 0.29
TIMP1-201ENST00000218388 AKT1S1Q96B36 256 aa16.87■□□□□ 0.29
TIMP1-201ENST00000218388 TFCP2L1Q9NZI6 479 aa16.87■□□□□ 0.29
TIMP1-201ENST00000218388 ZNF330Q9Y3S2 320 aaPredicted RBP16.87■□□□□ 0.29
TIMP1-201ENST00000218388 NBPF26B4DH59 902 aa16.86■□□□□ 0.29
TIMP1-201ENST00000218388 SLC4A2P04920 1241 aa16.86■□□□□ 0.29
TIMP1-201ENST00000218388 SSFA2P28290 1259 aa16.86■□□□□ 0.29
TIMP1-201ENST00000218388 SLC15A2Q16348 729 aa16.86■□□□□ 0.29
TIMP1-201ENST00000218388 NBPF10Q6P3W6 841 aaKnown RBP16.86■□□□□ 0.29
TIMP1-201ENST00000218388 NBPF15Q8N660 670 aa16.86■□□□□ 0.29
TIMP1-201ENST00000218388 FLAD1Q8NFF5 587 aa16.86■□□□□ 0.29
TIMP1-201ENST00000218388 SMC4Q9NTJ3 1288 aa16.86■□□□□ 0.29
TIMP1-201ENST00000218388 QSER1Q2KHR3 1735 aa16.86■□□□□ 0.29
TIMP1-201ENST00000218388 COL15A1P39059 1388 aa16.86■□□□□ 0.29
TIMP1-201ENST00000218388 PIP4K2AP48426 406 aaPredicted RBP16.85■□□□□ 0.29
TIMP1-201ENST00000218388 RARSP54136 660 aaKnown RBP16.85■□□□□ 0.29
TIMP1-201ENST00000218388 PDIA6Q15084 440 aa16.85■□□□□ 0.29
TIMP1-201ENST00000218388 ZNF827Q17R98 1081 aa16.85■□□□□ 0.29
TIMP1-201ENST00000218388 SSH1Q8WYL5 1049 aa16.85■□□□□ 0.29
TIMP1-201ENST00000218388 TUBGCP6Q96RT7 1819 aa16.84■□□□□ 0.29
TIMP1-201ENST00000218388 TCERG1O14776 1098 aaKnown RBP16.84■□□□□ 0.29
TIMP1-201ENST00000218388 EIF5P55010 431 aaKnown RBP16.84■□□□□ 0.29
TIMP1-201ENST00000218388 PROSER3Q2NL68 480 aa16.84■□□□□ 0.29
TIMP1-201ENST00000218388 TRAPPC3LQ5T215 181 aa16.84■□□□□ 0.29
TIMP1-201ENST00000218388 ANO8Q9HCE9 1232 aaPredicted RBP16.84■□□□□ 0.29
TIMP1-201ENST00000218388 RCAN3Q9UKA8 241 aa16.84■□□□□ 0.29
TIMP1-201ENST00000218388 PHF14O94880 888 aa16.83■□□□□ 0.28
TIMP1-201ENST00000218388 ANXA1P04083 346 aa16.83■□□□□ 0.28
TIMP1-201ENST00000218388 KIF6Q6ZMV9 814 aa16.83■□□□□ 0.28
TIMP1-201ENST00000218388 KIF16BQ96L93 1317 aa16.83■□□□□ 0.28
TIMP1-201ENST00000218388 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.82■□□□□ 0.28
TIMP1-201ENST00000218388 DDX58O95786 925 aaKnown RBP16.82■□□□□ 0.28
TIMP1-201ENST00000218388 CENPBP07199 599 aaPredicted RBP16.82■□□□□ 0.28
TIMP1-201ENST00000218388 RFC4P35249 363 aa16.82■□□□□ 0.28
TIMP1-201ENST00000218388 BRPF1P55201 1214 aaPredicted RBP16.82■□□□□ 0.28
TIMP1-201ENST00000218388 MRPL50Q8N5N7 158 aaKnown RBP16.82■□□□□ 0.28
TIMP1-201ENST00000218388 ARXQ96QS3 562 aa16.82■□□□□ 0.28
TIMP1-201ENST00000218388 BCL2L13Q9BXK5 485 aa16.82■□□□□ 0.28
TIMP1-201ENST00000218388 C4AP0C0L4 1744 aa16.82■□□□□ 0.28
TIMP1-201ENST00000218388 AIMP1Q12904 312 aaKnown RBP16.81■□□□□ 0.28
TIMP1-201ENST00000218388 FLIIQ13045 1269 aa16.81■□□□□ 0.28
TIMP1-201ENST00000218388 COPS6Q7L5N1 327 aa16.81■□□□□ 0.28
TIMP1-201ENST00000218388 LRP10Q7Z4F1 713 aa16.81■□□□□ 0.28
TIMP1-201ENST00000218388 DZIP3Q86Y13 1208 aaKnown RBP16.81■□□□□ 0.28
TIMP1-201ENST00000218388 XAGE3Q8WTP9 111 aa16.81■□□□□ 0.28
TIMP1-201ENST00000218388 PTPRCP08575 1304 aa16.8■□□□□ 0.28
TIMP1-201ENST00000218388 ZPR1O75312 459 aa16.8■□□□□ 0.28
TIMP1-201ENST00000218388 PHAXQ9H814 394 aaKnown RBP16.8■□□□□ 0.28
TIMP1-201ENST00000218388 BCORQ6W2J9 1755 aa16.79■□□□□ 0.28
TIMP1-201ENST00000218388 SCN7AQ01118 1682 aa16.79■□□□□ 0.28
TIMP1-201ENST00000218388 PNPLA7Q6ZV29 1317 aa16.79■□□□□ 0.28
TIMP1-201ENST00000218388 IPO8O15397 1037 aaKnown RBP16.79■□□□□ 0.28
TIMP1-201ENST00000218388 FKBP5Q13451 457 aaPredicted RBP16.79■□□□□ 0.28
TIMP1-201ENST00000218388 ARHGEF1Q92888 912 aaKnown RBP16.79■□□□□ 0.28
TIMP1-201ENST00000218388 ZNF652Q9Y2D9 606 aa16.79■□□□□ 0.28
TIMP1-201ENST00000218388 MAP3K15Q6ZN16 1313 aa16.78■□□□□ 0.28
TIMP1-201ENST00000218388 ERVV-1B6SEH8 477 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms