RNA–Protein interactions for RNA: ENSMUST00000062439.4

Ccdc54-201, Transcript of Coiled-coil domain-containing protein 54, mousemouse

APPRIS P1 BASIC

Gene Ccdc54, Length 1,296 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc54-201ENSMUST00000062439 Srsf11E9Q6E5 511 aaKnown RBP11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Prdm15E9Q8T2 1174 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Timp2P25785 220 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Kcnj4P52189 445 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Nkpd1Q0VF94 599 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Slc16a10Q3U9N9 512 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Rnpc3Q3UZ01 514 aaKnown RBP11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Usp20Q8C6M1 916 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Adgrg2Q8CJ12 1009 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Snx11Q91WL6 271 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Dtwd2Q9D0U1 298 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Gpc6Q9R087 555 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Sos2Q02384 1333 aa11.49□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 JunbP09450 344 aaKnown RBP11.48□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Sh3bp2Q06649 559 aa11.48□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Kmt5bQ3U8K7 883 aa11.48□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Sertm1Q8CD78 107 aa11.48□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 SelenooQ9DBC0 667 aa11.48□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 IghaA0A0A6YXW6 389 aa11.47□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Vmn1r194J3JS27 296 aa11.47□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Dnm1P39053 867 aa11.47□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Smg9Q9DB90 520 aa11.47□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Eif2ak3Q9Z2B5 1114 aa11.47□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Smarca2Q6DIC0 1577 aa11.46□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Gm21319F6YNI8 144 aa11.46□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 WasP70315 520 aa11.46□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Gbp1Q01514 589 aa11.46□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 HgsnatQ3UDW8 656 aa11.46□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Tmc6Q7TN60 810 aa11.46□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Alg3Q8K2A8 438 aa11.46□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Dhrs4Q99LB2 279 aa11.46□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Trip4Q9QXN3 581 aa11.46□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Dyrk1bQ9Z188 629 aa11.46□□□□□ -0.57
Ccdc54-201ENSMUST00000062439 Smarca4Q3TKT4 1613 aaKnown RBP11.46□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Dmrtb1A2A9I7 359 aa11.45□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Mphosph9A6H5Y1 991 aa11.45□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Slc23a3Q60850 611 aa11.45□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Vamp1Q62442 118 aa11.45□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Zscan10Q3URR7 782 aa11.44□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 GmipQ6PGG2 971 aa11.44□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 NbnQ9R207 751 aa11.44□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Pde4bB1AWC9 736 aa11.43□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 P4hbP09103 509 aaKnown RBP11.43□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Iqcf4Q6P8Y2 204 aa11.43□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Serinc5Q8BHJ6 461 aa11.43□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Ppp1r11Q8K1L5 131 aa11.43□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Bcs1lQ9CZP5 418 aa11.43□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Tjap1Q9DCD5 539 aa11.43□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Dusp13Q9QYJ7 198 aa11.43□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Traf6P70196 530 aa11.42□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Grin2cQ01098 1239 aa11.42□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 B430218F22RikQ8BQR5 223 aa11.42□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 GrhprQ91Z53 328 aa11.42□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Kif7B7ZNG0 1348 aa11.41□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Rtl1Q7M732 1744 aa11.41□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Kcnh2O35219 1162 aa11.41□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Grem1O70326 184 aa11.41□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Snw1Q9CSN1 536 aaKnown RBP11.41□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Elp3Q9CZX0 547 aa11.41□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Pax4P32115 349 aa11.4□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 AdnpQ9Z103 1108 aaKnown RBP11.4□□□□□ -0.58
Ccdc54-201ENSMUST00000062439 Gm13119B1ARV5 481 aa11.39□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Rasal2E9PW37 1286 aa11.39□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Aplp1Q03157 653 aa11.39□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Iqgap2Q3UQ44 1575 aa11.39□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Dhx37Q6NZL1 1150 aa11.39□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Ube2oQ6ZPJ3 1288 aa11.39□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 BroxQ8K2Q7 411 aa11.39□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Ubxn4Q8VCH8 506 aa11.39□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Sertad1Q9JL10 236 aa11.39□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Trip6Q9Z1Y4 480 aa11.39□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Ercc6F8VPZ5 1481 aa11.38□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 CerklA2AQH1 525 aa11.38□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 RtcbQ99LF4 505 aaKnown RBP11.38□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Gja5Q01231 358 aa11.37□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Doxl2Q6IMK7 723 aa11.37□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 CactinQ9CS00 772 aaKnown RBP11.37□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Rabgef1Q9JM13 491 aa11.37□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Cc2d2aQ8CFW7 1633 aa11.37□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Gm3147A0A0J9YU88 481 aa11.36□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Gm10424A0A0J9YVD0 481 aa11.36□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Gm7971J3QMM8 481 aa11.36□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Adrb2P18762 418 aa11.36□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Limch1Q3UH68 1057 aa11.36□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 BC061212Q6P8K3 481 aa11.36□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 A430089I19RikQ8C9W1 407 aa11.36□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Sugp2Q8CH09 1067 aa11.36□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Cecr2E9Q2Z1 1453 aa11.36□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Smad7O35253 426 aa11.35□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 PdgfaP20033 211 aa11.35□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Sema3eP70275 775 aa11.35□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Flt3Q00342 1000 aa11.35□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Tp53i13Q5F267 385 aa11.35□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Ildr1Q8CBR1 537 aa11.35□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Rbm12Q8R4X3 992 aaKnown RBP11.35□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Socs7Q8VHQ2 579 aa11.35□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Gmpr2Q99L27 348 aa11.35□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 NpcdF8VQB8 469 aa11.34□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Pnmal2G3X9N3 661 aa11.34□□□□□ -0.59
Ccdc54-201ENSMUST00000062439 Apba3O88888 571 aa11.34□□□□□ -0.59
Retrieved 100 of 22,080 RNA–protein pairs in 12.4 ms