RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PWWP2BQ6NUJ5 590 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 TMIGD1Q6UXZ0 262 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 GOLGA7Q7Z5G4 137 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 TCP10LQ8TDR4 215 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 REPS1Q96D71 796 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 MVB12AQ96EY5 273 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 CTRCQ99895 268 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 SLC25A18Q9H1K4 315 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 IPPKQ9H8X2 491 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 ACTR5Q9H9F9 607 aaPredicted RBP19.64■□□□□ 0.73
VPS53-210ENST00000571456 OXSMQ9NWU1 459 aa19.64■□□□□ 0.73
VPS53-210ENST00000571456 GEMIN8Q9NWZ8 242 aaKnown RBP19.64■□□□□ 0.73
VPS53-210ENST00000571456 URADA6NGE7 173 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 G3V2L1 256 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 AGRPO00253 132 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 SIX3O95343 332 aaPredicted RBP19.63■□□□□ 0.73
VPS53-210ENST00000571456 MLYCDO95822 493 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 DLGAP3O95886 979 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 KLK3P07288 261 aaPredicted RBP19.63■□□□□ 0.73
VPS53-210ENST00000571456 CCNYL3P0C7X3 344 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 ATP1A2P50993 1020 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 VSX2P58304 361 aaPredicted RBP19.63■□□□□ 0.73
VPS53-210ENST00000571456 SKP1P63208 163 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 DOC2AQ14183 400 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 MUM1Q2TAK8 710 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 ZNF678Q5SXM1 525 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 ASPGQ86U10 573 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 CSNK1A1LQ8N752 337 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 ZNF483Q8TF39 744 aaPredicted RBP19.63■□□□□ 0.73
VPS53-210ENST00000571456 ATP6V1E2Q96A05 226 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 TM4SF19Q96DZ7 209 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 DRC3Q9H069 523 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 ACTR8Q9H981 624 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 FOXJ2Q9P0K8 574 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 ASB1Q9Y576 335 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 PCDHGA11Q9Y5H2 935 aa19.63■□□□□ 0.73
VPS53-210ENST00000571456 ZNF749O43361 778 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 OR1F1O43749 312 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 KIAA0754O94854 1291 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 SUPT7LO94864 414 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 CLDN9O95484 217 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 CD63P08962 238 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 EPORP19235 508 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 GCGRP47871 477 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 CCNG1P51959 295 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 RGS1Q08116 209 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 FAM53BQ14153 422 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 SLBPQ14493 270 aaKnown RBP eCLIP19.62■□□□□ 0.73
VPS53-210ENST00000571456 TBR1Q16650 682 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 PRTGQ2VWP7 1150 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 GGTA1PQ4G0N0 100 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 FBXO48Q5FWF7 155 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 LIPMQ5VYY2 423 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 FRMPD2BQ6IN97 320 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 GRHL2Q6ISB3 625 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 C6orf15Q6UXA7 325 aaPredicted RBP19.62■□□□□ 0.73
VPS53-210ENST00000571456 DTX1Q86Y01 620 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 NLGN4XQ8N0W4 816 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 L3MBTL4Q8NA19 623 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 ARMC2Q8NEN0 867 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 NLGN4YQ8NFZ3 816 aaPredicted RBP19.62■□□□□ 0.73
VPS53-210ENST00000571456 SLC13A3Q8WWT9 602 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 TLCD1Q96CP7 247 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 CLIP3Q96DZ5 547 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 FAM111AQ96PZ2 611 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 TRMOQ9BU70 441 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 EFHD1Q9BUP0 239 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 TXLNGQ9NUQ3 528 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 CDC14AQ9UNH5 594 aa19.62■□□□□ 0.73
VPS53-210ENST00000571456 RP1L1Q8IWN7 2480 aaPredicted RBP19.62■□□□□ 0.73
VPS53-210ENST00000571456 LOC105369274A0A096LPK9 316 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 LOC102723532A0A0G2JNH3 316 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 HYKKA2RU49 373 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 ANKDD1BA6NHY2 528 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 AGPSO00116 658 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 HCRTR1O43613 425 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 TRIM13O60858 407 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 SPAG7O75391 227 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 PIM1P11309 404 aaPredicted RBP19.61■□□□□ 0.73
VPS53-210ENST00000571456 AGXTP21549 392 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 BCL6P41182 706 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 PHEXP78562 749 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 FOXK1P85037 733 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 CLCQ05315 142 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 ABHD18Q0P651 414 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 MED27Q6P2C8 311 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 PRMT9Q6P2P2 845 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 OR4N4Q8N0Y3 316 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 FAM26EQ8N5C1 309 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 PMEPA1Q969W9 287 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 TMEM237Q96Q45 408 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 SH3GL2Q99962 352 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 SPRTNQ9H040 489 aaPredicted RBP19.61■□□□□ 0.73
VPS53-210ENST00000571456 RHBGQ9H310 441 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 NOL11Q9H8H0 719 aaKnown RBP19.61■□□□□ 0.73
VPS53-210ENST00000571456 CUTCQ9NTM9 273 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 PADI1Q9ULC6 663 aa19.61■□□□□ 0.73
VPS53-210ENST00000571456 A0A1B0GX78 115 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 H0YIV9 168 aa19.6■□□□□ 0.73
VPS53-210ENST00000571456 DSCR3O14972 297 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms