RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 STC2O76061 302 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 MED26O95402 600 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 IFI30P13284 250 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 ITGALP20701 1170 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 PBLDP30039 288 aaPredicted RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 SNRPD2P62316 118 aaKnown RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 PPIGQ13427 754 aaKnown RBP eCLIP11.89□□□□□ -0.513e-7■■□□□ 11.4
LDLR-205ENST00000557933 KEAP1Q14145 624 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 KCNA10Q16322 511 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 TRIM46Q7Z4K8 759 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 GALNT13Q8IUC8 556 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 MMAAQ8IVH4 418 aaKnown RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 RBFAQ8N0V3 343 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 DNAJC22Q8N4W6 341 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 GLB1L3Q8NCI6 653 aaPredicted RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 IL17RDQ8NFM7 739 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 CIDECQ96AQ7 238 aaPredicted RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 ASIC4Q96FT7 647 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 TMEM246Q9BRR3 403 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 ZNF226Q9NYT6 803 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 NUFIP1Q9UHK0 495 aaKnown RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 ZNF221Q9UK13 617 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 YARS2Q9Y2Z4 477 aaKnown RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 MYOFQ9NZM1 2061 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 SLC38A8A6NNN8 435 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 H3BQ06 376 aaPredicted RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 HOXC11O43248 304 aaPredicted RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 OAZ2O95190 189 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 IGLV3-27P01718 113 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 CLEC2LP0C7M8 214 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 EBLN1P0CF75 366 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 TYMPP19971 482 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 SLC15A1P46059 708 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 WNT3P56703 355 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 HOXC5Q00444 222 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 MGAT3Q09327 533 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 MAD2L1Q13257 205 aaPredicted RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 CDH18Q13634 790 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 MBTPS1Q14703 1052 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 TAF12Q16514 161 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 INO80DQ53TQ3 878 aaPredicted RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 XKR6Q5GH73 641 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 NCEH1Q6PIU2 408 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 TMIGD1Q6UXZ0 262 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 SLC46A3Q7Z3Q1 461 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 BBS7Q8IWZ6 715 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 C1orf52Q8N6N3 182 aaKnown RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 RAET1EQ8TD07 263 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 MMP27Q9H306 513 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 CPNE5Q9HCH3 593 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 RANGRFQ9HD47 186 aaPredicted RBP11.89□□□□□ -0.51
LDLR-205ENST00000557933 SPASTQ9UBP0 616 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 LHX3Q9UBR4 397 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 PSORS1C1Q9UIG5 152 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 DNMT3LQ9UJW3 386 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 TBC1D24Q9ULP9 559 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 PLXNA4Q9HCM2 1894 aa11.89□□□□□ -0.51
LDLR-205ENST00000557933 E7EQ34 232 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 ZNF623O75123 536 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 C9P02748 559 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 CXCR2P25025 360 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 TNFSF8P32971 234 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 OR1D2P34982 312 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 CTSOP43234 321 aaPredicted RBP11.88□□□□□ -0.51
LDLR-205ENST00000557933 CSNK1DP48730 415 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 CLCN4P51793 760 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 CDH4P55283 916 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 KCNJ10P78508 379 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 LSM11P83369 360 aaKnown RBP eCLIP11.88□□□□□ -0.51
LDLR-205ENST00000557933 CYP4F8P98187 520 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 IRF8Q02556 426 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 ELP6Q0PNE2 266 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 TBRG1Q3YBR2 411 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.88□□□□□ -0.51
LDLR-205ENST00000557933 FAM26DQ5JW98 314 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 DGKKQ5KSL6 1271 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 ARMC4Q5T2S8 1044 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 LRIF1Q5T3J3 769 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 GPRC6AQ5T6X5 926 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 RNF180Q86T96 592 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 PLPP6Q8IY26 295 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 USP7Q93009 1102 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 C7orf34Q96L11 122 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 KLHL20Q9Y2M5 609 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 TMEM98Q9Y2Y6 226 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 CFAP20Q9Y6A4 193 aaKnown RBP11.88□□□□□ -0.51
LDLR-205ENST00000557933 CLCA1A8K7I4 914 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 GABRR3A8MPY1 467 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 MEN1O00255 615 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 HAT1O14929 419 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 GCM2O75603 506 aaPredicted RBP11.88□□□□□ -0.51
LDLR-205ENST00000557933 GPX5O75715 221 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 SNX4O95219 450 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 ELNP15502 786 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 CCND3P30281 292 aaPredicted RBP11.88□□□□□ -0.51
LDLR-205ENST00000557933 SOAT1P35610 550 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 PREPP48147 710 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 HNRNPFP52597 415 aaKnown RBP11.88□□□□□ -0.51
LDLR-205ENST00000557933 B4GALNT1Q00973 533 aa11.88□□□□□ -0.51
LDLR-205ENST00000557933 DUOXA1Q1HG43 343 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms