RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 H0YIG0 161 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 TK2O00142 265 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 PRPF4O43172 522 aaKnown RBP eCLIP18.84■□□□□ 0.61
CPSF1-209ENST00000532725 SERPIND1P05546 499 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 SERPINA6P08185 405 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 ZGLP1P0C6A0 271 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 SMIM10L1P0DMW3 83 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 PYGBP11216 843 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 EPB42P16452 691 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 AVPR1BP47901 424 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 IRF8Q02556 426 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 OCA2Q04671 838 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 LY6DQ14210 128 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 VWA2Q5GFL6 755 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 METTL2BQ6P1Q9 378 aaKnown RBP18.84■□□□□ 0.61
CPSF1-209ENST00000532725 LAPTM4BQ86VI4 370 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 LCA5Q86VQ0 697 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 PDSS2Q86YH6 399 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 TEX9Q8N6V9 391 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 EPS8L3Q8TE67 593 aaKnown RBP18.84■□□□□ 0.61
CPSF1-209ENST00000532725 SLC39A7Q92504 469 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 SMIM10Q96HG1 83 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 ARHGAP9Q9BRR9 750 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 EFCAB11Q9BUY7 163 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 SLC6A16Q9GZN6 736 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 MRPL46Q9H2W6 279 aaKnown RBP18.84■□□□□ 0.61
CPSF1-209ENST00000532725 TRPC4Q9UBN4 977 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 NXT1Q9UKK6 140 aaKnown RBP18.84■□□□□ 0.61
CPSF1-209ENST00000532725 TMCO1Q9UM00 188 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 MAN2B2Q9Y2E5 1009 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 MAP4K5Q9Y4K4 846 aa18.84■□□□□ 0.61
CPSF1-209ENST00000532725 GOLGA8RI6L899 631 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 FFAR3O14843 346 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 GPR42O15529 346 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 SIX3O95343 332 aaPredicted RBP18.83■□□□□ 0.6
CPSF1-209ENST00000532725 NUDT17P0C025 328 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 FAM87AP0C7U9 286 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 IL1RNP18510 177 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 OTX2P32243 289 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 MAT1AQ00266 395 aaKnown RBP18.83■□□□□ 0.6
CPSF1-209ENST00000532725 RGS1Q08116 209 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 LAPTM5Q13571 262 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 HERC3Q15034 1050 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 SYT16Q17RD7 645 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 SHISA6Q6ZSJ9 500 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 VN1R5Q7Z5H4 357 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 RAB43Q86YS6 212 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 APLFQ8IW19 511 aaPredicted RBP18.83■□□□□ 0.6
CPSF1-209ENST00000532725 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.83■□□□□ 0.6
CPSF1-209ENST00000532725 SHISA5Q8N114 240 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 PTGR2Q8N8N7 351 aaPredicted RBP18.83■□□□□ 0.6
CPSF1-209ENST00000532725 TTLQ8NG68 377 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 OR2W6PQ8NHA6 318 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 ZCCHC10Q8TBK6 192 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 UTP15Q8TED0 518 aaKnown RBP18.83■□□□□ 0.6
CPSF1-209ENST00000532725 NACC2Q96BF6 587 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 MIEF2Q96C03 454 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 PHF21BQ96EK2 531 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 SEC16BQ96JE7 1060 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 YIPF2Q9BWQ6 316 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 TGIF2Q9GZN2 237 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 AICDAQ9GZX7 198 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 RHBGQ9H310 441 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 KLHL31Q9H511 634 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 SOX17Q9H6I2 414 aaPredicted RBP18.83■□□□□ 0.6
CPSF1-209ENST00000532725 ANKHQ9HCJ1 492 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 MKKSQ9NPJ1 570 aaPredicted RBP18.83■□□□□ 0.6
CPSF1-209ENST00000532725 SCN3AQ9NY46 2000 aa18.83■□□□□ 0.6
CPSF1-209ENST00000532725 STX16-NPEPL1H3BU86 382 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 SGK494L7N484 410 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 E2F3O00716 465 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 STX16O14662 325 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 GALR3O60755 368 aaPredicted RBP18.82■□□□□ 0.6
CPSF1-209ENST00000532725 TBX6O95947 436 aaPredicted RBP18.82■□□□□ 0.6
CPSF1-209ENST00000532725 ALOX12P18054 663 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 MMP11P24347 488 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 GSTM2P28161 218 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 POLE2P56282 527 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 KLC1Q07866 573 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 PPP1R32Q7Z5V6 425 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 IP6K3Q96PC2 410 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 DCDC2Q9UHG0 476 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 NAALAD2Q9Y3Q0 740 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 ANGPTL3Q9Y5C1 460 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 MED13Q9UHV7 2174 aa18.82■□□□□ 0.6
CPSF1-209ENST00000532725 LRIT2A6NDA9 550 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 SMIM23A6NLE4 172 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 DNAJB6O75190 326 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 SMIM24O75264 130 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 CDH16O75309 829 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 CLEC3AO75596 197 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 KLHL18O94889 574 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 GSTA1P08263 222 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 ATP1A4Q13733 1029 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 GTF2H2Q13888 395 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 HIST2H2ACQ16777 129 aaPredicted RBP18.81■□□□□ 0.6
CPSF1-209ENST00000532725 PAGE2BQ5JRK9 111 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 HIST2H2AA3Q6FI13 130 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 GTF2H2CQ6P1K8 395 aa18.81■□□□□ 0.6
CPSF1-209ENST00000532725 GOLGA7Q7Z5G4 137 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms