RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ERVK-10P10266 1014 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 TFPIP10646 304 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLUP10909 449 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MCF2P10911 925 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC2A3P11169 496 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 DBTP11182 482 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 APEHP13798 732 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ETFAP13804 333 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ENO3P13929 434 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CPA3P15088 417 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF44P15621 663 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 GCFC2P16383 781 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 EPCAMP16422 314 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF3P17036 446 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CKMT2P17540 419 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRKACAP17612 351 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 AMD1P17707 334 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SRD5A1P18405 259 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 LBPP18428 481 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 UGT1A6P19224 532 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 NCF2P19878 526 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CD22P20273 847 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MX1P20591 662 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP3A5P20815 502 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MSR1P21757 451 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CD72P21854 359 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 UGT1A1P22309 533 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 UBA1P22314 1058 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CPN2P22792 545 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 GATA3P23771 443 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 FCARP24071 287 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 DNASE1P24855 282 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PSMA2P25787 234 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 U2AF2P26368 475 aaKnown RBP eCLIP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHMLP26374 656 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANXA13P27216 316 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIK3R1P27986 724 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PSMB4P28070 264 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHATP28329 748 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 HLA-FP30511 346 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHRNA5P30532 468 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 GABRA5P31644 462 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 FCGR2BP31994 310 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 OTX1P32242 354 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 NUP62P37198 522 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 TAGLN2P37802 199 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPAM1P38567 509 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 STAT6P42226 847 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC1A3P43003 542 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ALDH3B1P43353 468 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAGEA11P43364 429 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYKP43405 635 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR1G1P47890 313 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC6A8P48029 635 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 GLIPR1P48060 266 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 LHX1P48742 406 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 NOVP48745 357 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 NR2C2P49116 596 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTH2RP49190 550 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 STARP49675 285 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 METAP2P50579 478 aaKnown RBP eCLIP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPT1P50897 306 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP2J2P51589 502 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SMSP52788 366 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 EFNA5P52803 228 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 BLVRAP53004 296 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SUCLG1P53597 346 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 AP3M2P53677 418 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 NAPAP54920 295 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDH4P55283 916 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRMT2P55345 433 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 P2RX3P56373 397 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC37A1P57057 533 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 C21orf59P57076 290 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC8A3P57103 927 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CARD18P57730 90 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLDN2P57739 230 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 GSDMDP57764 484 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 RGS8P57771 180 aaPredicted RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 EIF3EP60228 445 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SEC61A1P61619 476 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 WDR5P61964 334 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 YWHAGP61981 247 aaKnown RBP eCLIP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 UBE2IP63279 158 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 EEF1A1P68104 462 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 NOP14P78316 857 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP4F2P78329 520 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTAG1AP78358 180 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAE1P78406 368 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 CBX1P83916 185 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPP2R2BQ00005 443 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SORDQ00796 357 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDE1BQ01064 536 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 MC2RQ01718 297 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 BNC1Q01954 994 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 RHAGQ02094 409 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACY1Q03154 408 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 FOLH1Q04609 750 aa0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 EEF1A2Q05639 463 aaKnown RBP0.55□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC18A2Q05940 514 aa0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms