RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 TRA2AQ13595 282 aaKnown RBP eCLIP3.79□□□□□ -1.8
NEDD4-209ENST00000508871 DLG2Q15700 870 aa3.79□□□□□ -1.8
NEDD4-209ENST00000508871 TMEM41BQ5BJD5 291 aa3.79□□□□□ -1.8
NEDD4-209ENST00000508871 PLAG1Q6DJT9 500 aa3.79□□□□□ -1.8
NEDD4-209ENST00000508871 GAREM2Q75VX8 874 aa3.79□□□□□ -1.8
NEDD4-209ENST00000508871 DNERQ8NFT8 737 aa3.79□□□□□ -1.8
NEDD4-209ENST00000508871 U2AF1L4Q8WU68 220 aaKnown RBP3.79□□□□□ -1.8
NEDD4-209ENST00000508871 WDR89Q96FK6 387 aaPredicted RBP3.79□□□□□ -1.8
NEDD4-209ENST00000508871 AIF1LQ9BQI0 150 aa3.79□□□□□ -1.8
NEDD4-209ENST00000508871 FUZQ9BT04 418 aa3.79□□□□□ -1.8
NEDD4-209ENST00000508871 MRI1Q9BV20 369 aa3.79□□□□□ -1.8
NEDD4-209ENST00000508871 NOL11Q9H8H0 719 aaKnown RBP3.79□□□□□ -1.8
NEDD4-209ENST00000508871 C19orf25Q9UFG5 118 aaPredicted RBP3.79□□□□□ -1.8
NEDD4-209ENST00000508871 VPS51Q9UID3 782 aa3.79□□□□□ -1.8
NEDD4-209ENST00000508871 NOSIPQ9Y314 301 aaKnown RBP3.79□□□□□ -1.8
NEDD4-209ENST00000508871 ZNF536O15090 1300 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 CDHR4A6H8M9 788 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ERI2A8K979 691 aaKnown RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 INPP4BO15327 924 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 KCNN4O15554 427 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ZNF28P17035 718 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 AKT2P31751 481 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 RPL21P46778 160 aaKnown RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 FKBP1BP68106 108 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 RRP1BQ14684 758 aaKnown RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 PPM1LQ5SGD2 360 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 SLX4IPQ5VYV7 408 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 IGFN1Q86VF2 1251 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ARL14Q8N4G2 192 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 OR52M1Q8NGK5 317 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 BLOC1S5Q8TDH9 187 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 PHF10Q8WUB8 498 aaKnown RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 NELFBQ8WX92 580 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 C16orf58Q96GQ5 468 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 SLC39A13Q96H72 371 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 MFSD14AQ96MC6 490 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 SEPT5Q99719 369 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 PAPOLGQ9BWT3 736 aaKnown RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 FRMD8P1Q9BZ68 369 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 SLC26A1Q9H2B4 701 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 HSD3B7Q9H2F3 369 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 SP140LQ9H930 580 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 PCDH18Q9HCL0 1135 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 NUDT15Q9NV35 164 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 NLKQ9UBE8 527 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 MLXQ9UH92 298 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ERRFI1Q9UJM3 462 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 CTNND2Q9UQB3 1225 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 LIPT1Q9Y234 373 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 UBIAD1Q9Y5Z9 338 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 CD8B2A6NJW9 211 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 NR5A2O00482 541 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 PSTPIP1O43586 416 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 SLC22A3O75751 556 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 RGS11O94810 467 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 CNPP09543 421 aaKnown RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ZNF44P15621 663 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 CCNE1P24864 410 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 MTCP1P56278 107 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 BACE1P56817 501 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 OCA2Q04671 838 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ACSM1Q08AH1 577 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 PJVKQ0ZLH3 352 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 PPIGQ13427 754 aaKnown RBP eCLIP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 GTF2H2Q13888 395 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 PNLIPRP3Q17RR3 467 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 CRB2Q5IJ48 1285 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 GTF2H2CQ6P1K8 395 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ZCCHC7Q8N3Z6 543 aaKnown RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 GUF1Q8N442 669 aaKnown RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ZNF417Q8TAU3 575 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 HERVK_113Q902F9 699 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ZNF587Q96SQ5 575 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 CMKLR1Q99788 373 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 MXRA8Q9BRK3 442 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 TUBB6Q9BUF5 446 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 FUNDC2Q9BWH2 189 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 UPF3AQ9H1J1 476 aaKnown RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 RHBGQ9H310 441 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 KCNK4Q9NYG8 393 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 TMCO1Q9UM00 188 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 MFHAS1Q9Y4C4 1052 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 KPTNQ9Y664 436 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 IGLV3-22A0A075B6J6 115 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 C5orf60A6NFR6 353 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 EFCAB9A8MZ26 197 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 QSOX1O00391 747 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 SLC37A4O43826 429 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 SLC19A2O60779 497 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ADAM11O75078 769 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 SEMA3DO95025 777 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 PRNPP04156 253 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 MDH1P40925 334 aaKnown RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 MNDAP41218 407 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 BPIFB4P59827 614 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 FAM189BP81408 668 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 MYBPHQ13203 477 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 ATP1A4Q13733 1029 aa3.78□□□□□ -1.8
NEDD4-209ENST00000508871 RFTN1Q14699 578 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-209ENST00000508871 SLC5A9Q2M3M2 681 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms