RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	REXO4	Q9GZR2	422 aa	Known RBP	12.94	□□□□□ -0.34
APTX-231	ENST00000494973	KLHL25	Q9H0H3	589 aa		12.94	□□□□□ -0.34
APTX-231	ENST00000494973	TCF7L2	Q9NQB0	619 aa		12.94	□□□□□ -0.34
APTX-231	ENST00000494973	IRAK4	Q9NWZ3	460 aa		12.94	□□□□□ -0.34
APTX-231	ENST00000494973	C1orf109	Q9NX04	203 aa		12.94	□□□□□ -0.34
APTX-231	ENST00000494973	TMEM9	Q9P0T7	183 aa		12.94	□□□□□ -0.34
APTX-231	ENST00000494973	SLC12A4	Q9UP95	1085 aa		12.94	□□□□□ -0.34
APTX-231	ENST00000494973	SRPK3	Q9UPE1	567 aa		12.94	□□□□□ -0.34
APTX-231	ENST00000494973	RUVBL1	Q9Y265	456 aa	Known RBP	12.94	□□□□□ -0.34
APTX-231	ENST00000494973	LAMA1	P25391	3075 aa		12.94	□□□□□ -0.34
APTX-231	ENST00000494973		A8MU76	341 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973		H0YGG7	62 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	SNX3	O60493	162 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	DKK1	O94907	266 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	SERPIND1	P05546	499 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	FTH1P19	P0C7X4	201 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	LINC00032	P0C843	101 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	LBP	P18428	481 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	NOVA1	P51513	510 aa	Known RBP	12.93	□□□□□ -0.34
APTX-231	ENST00000494973	NEK2	P51955	445 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	ARSF	P54793	590 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	ITGA1	P56199	1179 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	RAB15	P59190	212 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	ARF3	P61204	181 aa	Predicted RBP	12.93	□□□□□ -0.34
APTX-231	ENST00000494973	RPS13	P62277	151 aa	Known RBP	12.93	□□□□□ -0.34
APTX-231	ENST00000494973	CYP4F2	P78329	520 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	INSM1	Q01101	510 aa	Predicted RBP	12.93	□□□□□ -0.34
APTX-231	ENST00000494973	ACSM2A	Q08AH3	577 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	TUBB3	Q13509	450 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	IL11RA	Q14626	422 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	HERC3	Q15034	1050 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	FAM214A	Q32MH5	1076 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	ADPRM	Q3LIE5	342 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	SPDYA	Q5MJ70	313 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	TCHHL1	Q5QJ38	904 aa	Predicted RBP	12.93	□□□□□ -0.34
APTX-231	ENST00000494973	DEPDC1	Q5TB30	811 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	ACSM2B	Q68CK6	577 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	OGFOD2	Q6N063	350 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	SPATA19	Q7Z5L4	167 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	PLD3	Q8IV08	490 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	OR2L5	Q8NG80	312 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	CREB3L4	Q8TEY5	395 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	RGMA	Q96B86	450 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	TM4SF19	Q96DZ7	209 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	LIN37	Q96GY3	246 aa	Predicted RBP	12.93	□□□□□ -0.34
APTX-231	ENST00000494973	RILP	Q96NA2	401 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	FCRL4	Q96PJ5	515 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	KCNC2	Q96PR1	638 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	ELAC2	Q9BQ52	826 aa	Known RBP	12.93	□□□□□ -0.34
APTX-231	ENST00000494973	TMEM120A	Q9BXJ8	343 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	ACPT	Q9BZG2	426 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	SLC6A16	Q9GZN6	736 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	TUBB1	Q9H4B7	451 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	COPS7B	Q9H9Q2	264 aa	Predicted RBP	12.93	□□□□□ -0.34
APTX-231	ENST00000494973	CLK4	Q9HAZ1	481 aa	Known RBP	12.93	□□□□□ -0.34
APTX-231	ENST00000494973	LRTM1	Q9HBL6	345 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	FGF21	Q9NSA1	209 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	SIRT5	Q9NXA8	310 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	DCTN4	Q9UJW0	460 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	ADAM29	Q9UKF5	820 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	RARRES3	Q9UL19	164 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	MAPRE3	Q9UPY8	281 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	CLCA2	Q9UQC9	943 aa		12.93	□□□□□ -0.34
APTX-231	ENST00000494973	WBP11	Q9Y2W2	641 aa	Known RBP	12.93	□□□□□ -0.34
APTX-231	ENST00000494973	PCNX2	A6NKB5	2137 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	MDC1	Q14676	2089 aa	Known RBP	12.92	□□□□□ -0.34
APTX-231	ENST00000494973	ARHGAP10	A1A4S6	786 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973		B4E171	279 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	SDHD	O14521	159 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	ZNF195	O14628	629 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	TM4SF5	O14894	197 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	LSM1	O15116	133 aa	Known RBP	12.92	□□□□□ -0.34
APTX-231	ENST00000494973	LCMT2	O60294	686 aa	Known RBP	12.92	□□□□□ -0.34
APTX-231	ENST00000494973	GUCY1B2	O75343	617 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	OR2B3	O76000	313 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	MT-CO3	P00414	261 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	HBQ1	P09105	142 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	DDX5	P17844	614 aa	Known RBP	12.92	□□□□□ -0.34
APTX-231	ENST00000494973	TSPAN7	P41732	249 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	GABRA4	P48169	554 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	IDH3A	P50213	366 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	VSX2	P58304	361 aa	Predicted RBP	12.92	□□□□□ -0.34
APTX-231	ENST00000494973	ERVK-8	P63133	956 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	SIM1	P81133	766 aa	Predicted RBP	12.92	□□□□□ -0.34
APTX-231	ENST00000494973	ISX	Q2M1V0	245 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	MUM1	Q2TAK8	710 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	CCDC157	Q569K6	752 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	NXN	Q6DKJ4	435 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	VN1R5	Q7Z5H4	357 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	VN1R4	Q7Z5H5	301 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	PIGW	Q7Z7B1	504 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	TMPRSS12	Q86WS5	348 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	NUDT13	Q86X67	352 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	ZFAND4	Q86XD8	727 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	GALNT15	Q8N3T1	639 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	BCAS4	Q8TDM0	211 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	STARD8	Q92502	1023 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	MTFMT	Q96DP5	389 aa	Known RBP	12.92	□□□□□ -0.34
APTX-231	ENST00000494973	MVB12A	Q96EY5	273 aa		12.92	□□□□□ -0.34
APTX-231	ENST00000494973	ZPBP	Q9BS86	351 aa		12.92	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms