RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SPANXN4Q5MJ08 99 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 PRAMEF14Q5SWL7 426 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 PRAMEF13Q5VWM6 474 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 NOXRED1Q6NXP6 359 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 TBPL2Q6SJ96 375 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 NXPE4Q6UWF7 544 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 LCTLQ6UWM7 567 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 ABI3BPQ7Z7G0 1075 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 HID1Q8IV36 788 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 ADGRG5Q8IZF4 528 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 C2orf73Q8N5S3 287 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 GLB1L3Q8NCI6 653 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 FAM81AQ8TBF8 368 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 SETD7Q8WTS6 366 aaKnown RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 GAB3Q8WWW8 586 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 SLC5A11Q8WWX8 675 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 TFAP2CQ92754 450 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 HSPBAP1Q96EW2 488 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 C11orf24Q96F05 449 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 APOLD1Q96LR9 279 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 WDR92Q96MX6 357 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 ZBTB18Q99592 522 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 EHD1Q9H4M9 534 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 BRF2Q9HAW0 419 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 AASDHPPTQ9NRN7 309 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 PNPLA3Q9NST1 481 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 PCDHGA11Q9Y5H2 935 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 MAGED1Q9Y5V3 778 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-230ENST00000488543 HS3ST3A1Q9Y663 406 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 PLXND1Q9Y4D7 1925 aa11.68□□□□□ -0.54
HDAC6-230ENST00000488543 OR52A4PA6NMU1 304 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 MAGEB17A8MXT2 336 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 EML2O95834 649 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 HSD17B1P14061 328 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 HTR1BP28222 390 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 ALDH3B2P48448 385 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 PHC1P78364 1004 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 ARHGAP19Q14CB8 494 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 ALG11Q2TAA5 492 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 FAM174BQ3ZCQ3 159 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 PPP4R4Q6NUP7 873 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 MED27Q6P2C8 311 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 TTC33Q6PID6 262 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-230ENST00000488543 LAS2Q8IYD9 372 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 TBC1D21Q8IYX1 336 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 ANKFN1Q8N957 763 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 HUS1BQ8NHY5 278 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 ABTB1Q969K4 478 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-230ENST00000488543 EFHD1Q9BUP0 239 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 ADI1Q9BV57 179 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 ANKRD60Q9BZ19 345 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 NAA50Q9GZZ1 169 aaKnown RBP11.67□□□□□ -0.54
HDAC6-230ENST00000488543 MIR1-1HGQ9H1L0 117 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 TRIT1Q9H3H1 467 aaKnown RBP11.67□□□□□ -0.54
HDAC6-230ENST00000488543 CCM2LQ9NUG4 571 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-230ENST00000488543 GALNT8Q9NY28 637 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 SCHIP1Q9P0W5 487 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-230ENST00000488543 SPATA7Q9P0W8 599 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 VPS29Q9UBQ0 182 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 PPT2Q9UMR5 302 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 TRBV23OR9-2A0A075B6M9 112 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 A0A1W2PPV9 198 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 PIPSLA2A3N6 862 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 B4GAT1O43505 415 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 RASGRP1O95267 797 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 STAMBPO95630 424 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 SNAP29O95721 258 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 NPPAP01160 153 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 RPN2P04844 631 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 THEGLP0DJG4 465 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 PCNAP12004 261 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 SRP54P61011 504 aaKnown RBP11.67□□□□□ -0.54
HDAC6-230ENST00000488543 RAE1P78406 368 aaKnown RBP11.67□□□□□ -0.54
HDAC6-230ENST00000488543 LIPEQ05469 1076 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 SRSF5Q13243 272 aaKnown RBP11.67□□□□□ -0.54
HDAC6-230ENST00000488543 SELPLGQ14242 412 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 CLCA4Q14CN2 919 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 ZIK1Q3SY52 487 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-230ENST00000488543 RIMKLAQ8IXN7 391 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 SLC13A3Q8WWT9 602 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 C12orf66Q96MD2 445 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 HSPA12BQ96MM6 686 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 TSSK3Q96PN8 268 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 EFCAB11Q9BUY7 163 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 EBPLQ9BY08 206 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 AGPAT4Q9NRZ5 378 aa11.67□□□□□ -0.54
HDAC6-230ENST00000488543 TDRD6O60522 2096 aaKnown RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 A0A0J9YVX5 310 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 KCNJ13O60928 360 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 WNT1P04628 370 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 BMP2P12643 396 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 CDH1P12830 882 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 PSMA4P25789 261 aaKnown RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 MAPK1P28482 360 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 EMP3P54852 163 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 OR4D2P58180 307 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 RPS13P62277 151 aaKnown RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 MEF2AQ02078 507 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-230ENST00000488543 TMED1Q13445 227 aa11.66□□□□□ -0.54
HDAC6-230ENST00000488543 PWP1Q13610 501 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms