RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 PCDH20Q8N6Y1 951 aaKnown RBP4.39□□□□□ -1.71
VPS50-214ENST00000477935 CSNK2A3Q8NEV1 391 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 SPATA3Q8NHX4 192 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 WDR36Q8NI36 951 aaKnown RBP4.39□□□□□ -1.71
VPS50-214ENST00000477935 TBCKQ8TEA7 893 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 ABTB1Q969K4 478 aaPredicted RBP4.39□□□□□ -1.71
VPS50-214ENST00000477935 C18orf25Q96B23 403 aaPredicted RBP4.39□□□□□ -1.71
VPS50-214ENST00000477935 GRAMD2BQ96HH9 432 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 PPP1R13BQ96KQ4 1090 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 NODALQ96S42 347 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 ACOX2Q99424 681 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 TCHPQ9BT92 498 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 STRA6Q9BX79 667 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 SCPEP1Q9HB40 452 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 SGK2Q9HBY8 427 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 ACSS1Q9NUB1 689 aaPredicted RBP4.39□□□□□ -1.71
VPS50-214ENST00000477935 WDR35Q9P2L0 1181 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 ORC3Q9UBD5 711 aaPredicted RBP4.39□□□□□ -1.71
VPS50-214ENST00000477935 DDX25Q9UHL0 483 aaKnown RBP4.39□□□□□ -1.71
VPS50-214ENST00000477935 PADI1Q9ULC6 663 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 UBQLN1Q9UMX0 589 aaKnown RBP4.39□□□□□ -1.71
VPS50-214ENST00000477935 SATB2Q9UPW6 733 aa4.39□□□□□ -1.71
VPS50-214ENST00000477935 FAM237AA0A1B0GTK4 181 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 J3KRW8 73 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 TNFSF15O95150 251 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 BAG4O95429 457 aaKnown RBP4.38□□□□□ -1.71
VPS50-214ENST00000477935 SEMA4FO95754 770 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 UMODP07911 640 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 CDH1P12830 882 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 ITGA2P17301 1181 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 CORO1AP31146 461 aaKnown RBP4.38□□□□□ -1.71
VPS50-214ENST00000477935 USP8P40818 1118 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 OSTNP61366 133 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 OLR1P78380 273 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 MPP1Q00013 466 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 PDE1BQ01064 536 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 TSPY1Q01534 308 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 AKAP17AQ02040 695 aaKnown RBP4.38□□□□□ -1.71
VPS50-214ENST00000477935 TMEM115Q12893 351 aaPredicted RBP4.38□□□□□ -1.71
VPS50-214ENST00000477935 ENPP2Q13822 863 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 ZBTB6Q15916 424 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 SYT16Q17RD7 645 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 FRG2Q64ET8 278 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 SIGIRRQ6IA17 410 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 CCDC70Q6NSX1 233 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 USP43Q70EL4 1123 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 DPPA4Q7L190 304 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 ZNF329Q86UD4 541 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 RNF113BQ8IZP6 322 aaKnown RBP4.38□□□□□ -1.71
VPS50-214ENST00000477935 BEST3Q8N1M1 668 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 OR10T2Q8NGX3 314 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 BBS10Q8TAM1 723 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 UCMAQ8WVF2 138 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 BIRC7Q96CA5 298 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 INTS12Q96CB8 462 aaKnown RBP4.38□□□□□ -1.71
VPS50-214ENST00000477935 ORAI1Q96D31 301 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 ERLEC1Q96DZ1 483 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 MMABQ96EY8 250 aaPredicted RBP4.38□□□□□ -1.71
VPS50-214ENST00000477935 IFT74Q96LB3 600 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 SENP8Q96LD8 212 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 PPM1MQ96MI6 270 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 MTERF1Q99551 399 aaKnown RBP4.38□□□□□ -1.71
VPS50-214ENST00000477935 NAP1L4Q99733 375 aaKnown RBP4.38□□□□□ -1.71
VPS50-214ENST00000477935 HSD17B14Q9BPX1 270 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 PCGF1Q9BSM1 259 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 PDCL3Q9H2J4 239 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 SEBOXQ9HB31 216 aaPredicted RBP4.38□□□□□ -1.71
VPS50-214ENST00000477935 KCNMB3Q9NPA1 279 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 SH3GLB2Q9NR46 395 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 KLHL1Q9NR64 748 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 SPHK2Q9NRA0 654 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 ZNF711Q9Y462 761 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 CELSR1Q9NYQ6 3014 aa4.38□□□□□ -1.71
VPS50-214ENST00000477935 CCDC168Q8NDH2 2452 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 A0A0B4J293 547 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 LILRA5A6NI73 299 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 TMX2-CTNND1H3BSU7 103 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 TLR4O00206 839 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 ZBTB43O43298 467 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 TIMM44O43615 452 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 NKX2-2O95096 273 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 TDP2O95551 362 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 OLFM2O95897 454 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 ALPPL2P10696 532 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 LIPCP11150 499 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 MYOD1P15172 320 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 GCFC2P16383 781 aaKnown RBP4.37□□□□□ -1.71
VPS50-214ENST00000477935 ACSL1P33121 698 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 CCR9P51686 369 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 FOXM1Q08050 763 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 OVGP1Q12889 678 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 KLRB1Q12918 225 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 TBX2Q13207 712 aaPredicted RBP4.37□□□□□ -1.71
VPS50-214ENST00000477935 EIF3IQ13347 325 aaKnown RBP4.37□□□□□ -1.71
VPS50-214ENST00000477935 DCTN2Q13561 401 aaKnown RBP4.37□□□□□ -1.71
VPS50-214ENST00000477935 FRG1Q14331 258 aaKnown RBP4.37□□□□□ -1.71
VPS50-214ENST00000477935 CCNG2Q16589 344 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 KYAT1Q16773 422 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 DPCR1Q3MIW9 517 aa4.37□□□□□ -1.71
VPS50-214ENST00000477935 CFAP221Q4G0U5 840 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms