RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 GABRR3A8MPY1 467 aa21.27■■□□□ 1
USP4-208ENST00000464168 GOLGA8MH3BSY2 632 aa21.27■■□□□ 1
USP4-208ENST00000464168 CDC123O75794 336 aaPredicted RBP21.27■■□□□ 1
USP4-208ENST00000464168 NEURL1O76050 574 aa21.27■■□□□ 1
USP4-208ENST00000464168 MLYCDO95822 493 aa21.27■■□□□ 1
USP4-208ENST00000464168 IL10P22301 178 aa21.27■■□□□ 1
USP4-208ENST00000464168 MPP1Q00013 466 aa21.27■■□□□ 1
USP4-208ENST00000464168 USP10Q14694 798 aaKnown RBP21.27■■□□□ 1
USP4-208ENST00000464168 AGTRAPQ6RW13 159 aa21.27■■□□□ 1
USP4-208ENST00000464168 LMNTD2Q8IXW0 634 aa21.27■■□□□ 1
USP4-208ENST00000464168 SLC5A8Q8N695 610 aa21.27■■□□□ 1
USP4-208ENST00000464168 TMEM178AQ8NBL3 297 aa21.27■■□□□ 1
USP4-208ENST00000464168 OR5T3Q8NGG3 340 aa21.27■■□□□ 1
USP4-208ENST00000464168 EEF1AKMT1Q8WVE0 214 aa21.27■■□□□ 1
USP4-208ENST00000464168 TSLPQ969D9 159 aa21.27■■□□□ 1
USP4-208ENST00000464168 PEX11GQ96HA9 241 aa21.27■■□□□ 1
USP4-208ENST00000464168 OR1F2PQ96R84 312 aa21.27■■□□□ 1
USP4-208ENST00000464168 LPAR4Q99677 370 aa21.27■■□□□ 1
USP4-208ENST00000464168 RBCK1Q9BYM8 510 aa21.27■■□□□ 1
USP4-208ENST00000464168 ZNF860A6NHJ4 632 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 MAGEB17A8MXT2 336 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 ASNA1O43681 348 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 SP1P08047 785 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 CDH1P12830 882 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 NPPBP16860 134 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 KIR3DL1P43629 444 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 OC90Q02509 493 aaPredicted RBP21.26■□□□□ 0.99
USP4-208ENST00000464168 NAE1Q13564 534 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 GALNTL5Q7Z4T8 443 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 AFAP1L2Q8N4X5 818 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 MFSD9Q8NBP5 474 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 CALML6Q8TD86 181 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 MTFMTQ96DP5 389 aaKnown RBP21.26■□□□□ 0.99
USP4-208ENST00000464168 TRIM51Q9BSJ1 452 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 SGPP1Q9BX95 441 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 PARVBQ9HBI1 364 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 CACNA1CQ13936 2221 aa21.26■□□□□ 0.99
USP4-208ENST00000464168 DNAJB6O75190 326 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 CLDN14O95500 239 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 C8GP07360 202 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 SLC35G6P0C7Q6 338 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 MAGEA3P43357 314 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 SLC26A5P58743 744 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 HSP90AA5PQ58FG0 334 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 ZNF468Q5VIY5 522 aaPredicted RBP21.25■□□□□ 0.99
USP4-208ENST00000464168 SLC25A25Q6KCM7 469 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 ZNF662Q6ZS27 426 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 NCCRP1Q6ZVX7 275 aaPredicted RBP21.25■□□□□ 0.99
USP4-208ENST00000464168 PNPLA5Q7Z6Z6 429 aaPredicted RBP21.25■□□□□ 0.99
USP4-208ENST00000464168 CHERPQ8IWX8 916 aaKnown RBP21.25■□□□□ 0.99
USP4-208ENST00000464168 LGI4Q8N135 537 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 HORMAD2Q8N7B1 307 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 ELP5Q8TE02 316 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 ALKBH8Q96BT7 664 aaKnown RBP21.25■□□□□ 0.99
USP4-208ENST00000464168 SIGLEC10Q96LC7 697 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 CDCP1Q9H5V8 836 aa21.25■□□□□ 0.99
USP4-208ENST00000464168 TRMT6Q9UJA5 497 aaKnown RBP21.25■□□□□ 0.99
USP4-208ENST00000464168 NDC80O14777 642 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 ZNHIT1O43257 154 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 CCND1P24385 295 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 GRK3P35626 688 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 OR4D2P58180 307 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 TAS2R50P59544 299 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 HERC3Q15034 1050 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 LRRC8EQ6NSJ5 796 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 LCTLQ6UWM7 567 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 RPS19BP1Q86WX3 136 aaKnown RBP21.24■□□□□ 0.99
USP4-208ENST00000464168 ZNF740Q8NDX6 193 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 ABHD11Q8NFV4 315 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 NDNQ99608 321 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 GPAMQ9HCL2 828 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 LRFN1Q9P244 771 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 NEU2Q9Y3R4 380 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 MAD1L1Q9Y6D9 718 aa21.24■□□□□ 0.99
USP4-208ENST00000464168 GTF3C1Q12789 2109 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 GALR3O60755 368 aaPredicted RBP21.23■□□□□ 0.99
USP4-208ENST00000464168 FHP07954 510 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 PHKG1Q16816 387 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 RNFT1Q5M7Z0 435 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 UGT3A1Q6NUS8 523 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 PAQR3Q6TCH7 311 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 KIF2BQ8N4N8 673 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 OR4K1Q8NGD4 311 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 AGAP11Q8TF27 550 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 TBC1D20Q96BZ9 403 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 SARGQ9BW04 601 aa21.23■□□□□ 0.99
USP4-208ENST00000464168 IARS2Q9NSE4 1012 aaKnown RBP21.23■□□□□ 0.99
USP4-208ENST00000464168 CDK2AP1O14519 115 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 SLC16A5O15375 505 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 CHST10O43529 356 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 SLC25A12O75746 678 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 B3GALT4O96024 378 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 SSTR2P30874 369 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 RGS4P49798 205 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 RIPPLY3P57055 190 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 KRTAP10-9P60411 292 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 HSF1Q00613 529 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 MEF2AQ02078 507 aaPredicted RBP21.22■□□□□ 0.99
USP4-208ENST00000464168 DHX9Q08211 1270 aaKnown RBP21.22■□□□□ 0.99
USP4-208ENST00000464168 SP140Q13342 867 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms