RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 HIST2H2ACQ16777 129 aaPredicted RBP10.49□□□□□ -0.73
SCN9A-205ENST00000454569 PAGE2BQ5JRK9 111 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 CACHD1Q5VU97 1274 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 NXNQ6DKJ4 435 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 HIST2H2AA3Q6FI13 130 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 UBE3DQ7Z6J8 389 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 MTDHQ86UE4 582 aaKnown RBP10.49□□□□□ -0.73
SCN9A-205ENST00000454569 KRT78Q8N1N4 520 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 DNAJC22Q8N4W6 341 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 DTWD1Q8N5C7 304 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 C19orf47Q8N9M1 422 aaKnown RBP10.49□□□□□ -0.73
SCN9A-205ENST00000454569 MFSD9Q8NBP5 474 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 KCT2Q8NC54 265 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 RCBTB1Q8NDN9 531 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 ZUFSPQ96AP4 578 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 TUBGCP3Q96CW5 907 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 RNF31Q96EP0 1072 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 RILPQ96NA2 401 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 CATSPER2Q96P56 530 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 C1orf50Q9BV19 199 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 SARGQ9BW04 601 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 MRPL1Q9BYD6 325 aaKnown RBP10.49□□□□□ -0.73
SCN9A-205ENST00000454569 LHX9Q9NQ69 397 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 C1GALT1Q9NS00 363 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 SLC12A4Q9UP95 1085 aa10.49□□□□□ -0.73
SCN9A-205ENST00000454569 MRPS2Q9Y399 296 aaKnown RBP10.49□□□□□ -0.73
SCN9A-205ENST00000454569 A0A0G2JN53 185 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 TLCD2A6NGC4 264 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 H0YGG7 62 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 RTCAO00442 366 aaKnown RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 NTN3O00634 580 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 LRP3O75074 770 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 DNAJB6O75190 326 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 MED26O95402 600 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 CHEK2O96017 543 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 SERPIND1P05546 499 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ACP1P24666 158 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ACADVLP49748 655 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ARF3P61204 181 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 RAE1P78406 368 aaKnown RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 SQSTM1Q13501 440 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 UBAP2LQ14157 1087 aaKnown RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 HKDC1Q2TB90 917 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 AP5B1Q2VPB7 878 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 STPG1Q5TH74 334 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 TMEM71Q6P5X7 295 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 KLHL35Q6PF15 583 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 WDR74Q6RFH5 385 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 RNF165Q6ZSG1 346 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 RNF44Q7L0R7 432 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 B3GNT8Q7Z7M8 397 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 OR6C4Q8NGE1 309 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 WDR48Q8TAF3 677 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ACTRT2Q8TDY3 377 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 CCT6BQ92526 530 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 TM4SF19Q96DZ7 209 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 C11orf24Q96F05 449 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 MS4A8Q9BY19 250 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ZNF717Q9BY31 904 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 NMUR2Q9GZQ4 415 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 IRF2BPLQ9H1B7 796 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 KCNH6Q9H252 994 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ZNF385DQ9H6B1 395 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 SYNDIG1Q9H7V2 258 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 TOR4AQ9NXH8 423 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ARMCX1Q9P291 453 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 FTSJ1Q9UET6 329 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ZFP69BQ9UJL9 534 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 DLGAP4Q9Y2H0 992 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 TSC22D4Q9Y3Q8 395 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 AP1M2Q9Y6Q5 423 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 PTPRBP23467 1997 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 IGHV5-10-1A0A0J9YXX1 117 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ANKDD1BA6NHY2 528 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 SLC28A1O00337 649 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 FOXE1O00358 373 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 RASSF9O75901 435 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 GBAP04062 536 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 HRH2P25021 359 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 CXCR2P25025 360 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 TACR1P25103 407 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 PDX1P52945 283 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 NME5P56597 212 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 VSX2P58304 361 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 RPL38P63173 70 aaKnown RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ELOAQ14241 798 aaKnown RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 CCDC157Q569K6 752 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 SPDYAQ5MJ70 313 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 CHSY3Q70JA7 882 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 PIP4P1Q86T03 277 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 TREML1Q86YW5 311 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 AFAP1L2Q8N4X5 818 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 FITM2Q8N6M3 262 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 CEP70Q8NHQ1 597 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 NAT6Q93015 286 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ZDHHC12Q96GR4 267 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 TEX37Q96LM6 180 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 MAGEB10Q96LZ2 347 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 ARHGAP9Q9BRR9 750 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms