RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 TRMUO75648 421 aaKnown RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 CPSF4O95639 269 aaKnown RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 ABCB1P08183 1280 aaPredicted RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 GLULP15104 373 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 IDSP22304 550 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 CALRP27797 417 aaKnown RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 SLC5A2P31639 672 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 KDELR2P33947 212 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 TAP2Q03519 686 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 ZNF763Q0D2J5 394 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 SLBPQ14493 270 aaKnown RBP eCLIP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 STARD3Q14849 445 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 PLCL1Q15111 1095 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 SHQ1Q6PI26 577 aaKnown RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 ADAMTSL4Q6UY14 1074 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 SLC5A11Q8WWX8 675 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 SNX19Q92543 992 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 SH3KBP1Q96B97 665 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 TUBA1CQ9BQE3 449 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 NPLQ9BXD5 320 aaPredicted RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 GABARAPL1Q9H0R8 117 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 TM9SF3Q9HD45 589 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 PRM3Q9NNZ6 103 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 DMRT3Q9NQL9 472 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 ATAD3AQ9NVI7 634 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 ZNF282Q9UDV7 671 aaPredicted RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 UTS2RQ9UKP6 389 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 GNG14A0A1W2PPG7 69 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 RPL10P27635 214 aaKnown RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 PIK3CBP42338 1070 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 GALK1P51570 392 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 IL18R1Q13478 541 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 FAM46CQ5VWP2 391 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 NXPE4Q6UWF7 544 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 CBLL1Q75N03 491 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 EIF3MQ7L2H7 374 aaKnown RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 R3HCC1LQ7Z5L2 792 aaKnown RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 CLECL1Q8IZS7 167 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 HDAC2Q92769 488 aaKnown RBP20.7■□□□□ 0.9
TRIM54-202ENST00000380075 COX14Q96I36 57 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 SMURF2Q9HAU4 748 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 VPS4AQ9UN37 437 aa20.7■□□□□ 0.9
TRIM54-202ENST00000380075 PIPSLA2A3N6 862 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 RPS6KA3P51812 740 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 ARHGDIAP52565 204 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 IST1P53990 364 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 SIGLEC14Q08ET2 396 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 HKDC1Q2TB90 917 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 LRRC23Q53EV4 343 aaPredicted RBP20.69■□□□□ 0.9
TRIM54-202ENST00000380075 ZNF773Q6PK81 442 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 PTOV1Q86YD1 416 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 SYNPOQ8N3V7 929 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 ARL10Q8N8L6 244 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 ZNF420Q8TAQ5 688 aaPredicted RBP20.69■□□□□ 0.9
TRIM54-202ENST00000380075 RAD51AP1Q96B01 352 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 CNDP2Q96KP4 475 aaKnown RBP20.69■□□□□ 0.9
TRIM54-202ENST00000380075 MBOAT4Q96T53 435 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 ASPSCR1Q9BZE9 553 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 REEP4Q9H6H4 257 aa20.69■□□□□ 0.9
TRIM54-202ENST00000380075 THAP10Q9P2Z0 257 aaPredicted RBP20.69■□□□□ 0.9
TRIM54-202ENST00000380075 C1orf226A1L170 272 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 TBC1D3BA6NDS4 549 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 ZNF682O95780 498 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 SEMG1P04279 462 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 KELP23276 732 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 P2RY2P41231 377 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 TOP3AQ13472 1001 aaPredicted RBP20.68■□□□□ 0.9
TRIM54-202ENST00000380075 CATSPEREQ5SY80 951 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 MMAAQ8IVH4 418 aaKnown RBP20.68■□□□□ 0.9
TRIM54-202ENST00000380075 FAM3CQ92520 227 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 ZDHHC5Q9C0B5 715 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 OR52A5Q9H2C5 316 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 TIMMDC1Q9NPL8 285 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 BTBD3Q9Y2F9 522 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 DPM1O60762 260 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 SHMT2P34897 504 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 OR2T5Q6IEZ7 315 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 ADNP2Q6IQ32 1131 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 CRTC3Q6UUV7 619 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 LCTLQ6UWM7 567 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 TMEM26Q6ZUK4 368 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 C11orf96Q7Z7L8 435 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 PDZD3Q86UT5 571 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 GPR156Q8NFN8 814 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 OR2T29Q8NH02 315 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 GOT1L1Q8NHS2 421 aaPredicted RBP20.68■□□□□ 0.9
TRIM54-202ENST00000380075 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.68■□□□□ 0.9
TRIM54-202ENST00000380075 NRBF2Q96F24 287 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 CHST8Q9H2A9 424 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 BAG5Q9UL15 447 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 BLOC1S6Q9UL45 172 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 DNMT3AQ9Y6K1 912 aaPredicted RBP20.68■□□□□ 0.9
TRIM54-202ENST00000380075 F5P12259 2224 aa20.68■□□□□ 0.9
TRIM54-202ENST00000380075 PLK4O00444 970 aa20.67■□□□□ 0.9
TRIM54-202ENST00000380075 YY2O15391 372 aa20.67■□□□□ 0.9
TRIM54-202ENST00000380075 SLC16A6O15403 523 aa20.67■□□□□ 0.9
TRIM54-202ENST00000380075 HS6ST1O60243 411 aa20.67■□□□□ 0.9
TRIM54-202ENST00000380075 RPN2P04844 631 aa20.67■□□□□ 0.9
TRIM54-202ENST00000380075 FABP3P05413 133 aa20.67■□□□□ 0.9
TRIM54-202ENST00000380075 TPD52P55327 224 aaPredicted RBP20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms