RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 BBS4Q96RK4 519 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 KAT8Q9H7Z6 458 aaKnown RBP11.52□□□□□ -0.57
USP1-201ENST00000339950 RLIMQ9NVW2 624 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 ATP6V1HQ9UI12 483 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 OARD1Q9Y530 152 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 PCM1Q15154 2024 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 GNB5O14775 395 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 POP4O95707 220 aaKnown RBP11.52□□□□□ -0.57
USP1-201ENST00000339950 IGFBP1P08833 259 aaPredicted RBP11.52□□□□□ -0.57
USP1-201ENST00000339950 HOXC5Q00444 222 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 ABHD18Q0P651 414 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 ST3GAL4Q11206 333 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 EXOC3L2Q2M3D2 409 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 AFMIDQ63HM1 303 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 CDH24Q86UP0 819 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 TRIM48Q8IWZ4 208 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 SCML4Q8N228 414 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 AQP11Q8NBQ7 271 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 KCT2Q8NC54 265 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 LEMD2Q8NC56 503 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 HTATIP2Q9BUP3 242 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 NLNQ9BYT8 704 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 COQ3Q9NZJ6 369 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 TAC3Q9UHF0 121 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 SARDHQ9UL12 918 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 GMEB1Q9Y692 573 aa11.52□□□□□ -0.57
USP1-201ENST00000339950 IGLV3-10A0A075B6K4 115 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.51□□□□□ -0.57
USP1-201ENST00000339950 ANTXRLA6NF34 631 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 PRSS23O95084 383 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 HMGA1P17096 107 aaKnown RBP11.51□□□□□ -0.57
USP1-201ENST00000339950 NR4A2P43354 598 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 METAP1P53582 386 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 DUOXA1Q1HG43 343 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 COX20Q5RI15 118 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 ELMSAN1Q6PJG2 1045 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 SMARCD3Q6STE5 483 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 B3GLCTQ6Y288 498 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 GAREM2Q75VX8 874 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 OSBPL10Q9BXB5 764 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 PDFQ9HBH1 243 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 MS4A12Q9NXJ0 267 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 CLCA2Q9UQC9 943 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 WWP2O00308 870 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 OR1F1O43749 312 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 GADD45GO95257 159 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 FCER2P06734 321 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 FHP07954 510 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 CTNNB1P35222 781 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 DAPP51397 102 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 ARPC4P59998 168 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 RAB8AP61006 207 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 FOXM1Q08050 763 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 NFE2L1Q14494 772 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 ERAP2Q6P179 960 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 SPRED1Q7Z699 444 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 FAM129CQ86XR2 697 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 WDR48Q8TAF3 677 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 GFM1Q96RP9 751 aaKnown RBP11.51□□□□□ -0.57
USP1-201ENST00000339950 ANKRA2Q9H9E1 313 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 PAK1IP1Q9NWT1 392 aaPredicted RBP11.51□□□□□ -0.57
USP1-201ENST00000339950 STOX2Q9P2F5 926 aaPredicted RBP11.51□□□□□ -0.57
USP1-201ENST00000339950 INTS6Q9UL03 887 aaKnown RBP11.51□□□□□ -0.57
USP1-201ENST00000339950 SLC9A8Q9Y2E8 581 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 TRBC2A0A5B9 178 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 NOTOA8MTQ0 251 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 PIM1P11309 404 aaPredicted RBP11.51□□□□□ -0.57
USP1-201ENST00000339950 PRPS1L1P21108 318 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 SSTR4P31391 388 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 IL12RB1P42701 662 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 ID2Q02363 134 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 MVKQ03426 396 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 TARDBPQ13148 414 aaKnown RBP eCLIP11.51□□□□□ -0.57
USP1-201ENST00000339950 SCARB2Q14108 478 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 B3GNT8Q7Z7M8 397 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 ZNF683Q8IZ20 524 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 F2RL3Q96RI0 385 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 CSF3RQ99062 836 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 SLC46A2Q9BY10 475 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 CREBZFQ9NS37 354 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 SEC14L3Q9UDX4 400 aa11.51□□□□□ -0.57
USP1-201ENST00000339950 A0A1W2PRB8 838 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 TCRBV5S2A0A599 114 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 ARHGEF33A8MVX0 844 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 UGT2B11O75310 529 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 PRPS2P11908 318 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 DNAJA1P31689 397 aaKnown RBP11.5□□□□□ -0.57
USP1-201ENST00000339950 SOX6P35712 828 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 PSMD8P48556 350 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 TMEM115Q12893 351 aaPredicted RBP11.5□□□□□ -0.57
USP1-201ENST00000339950 NPRL3Q12980 569 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 ZFP69Q49AA0 526 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 ZNF420Q8TAQ5 688 aaPredicted RBP11.5□□□□□ -0.57
USP1-201ENST00000339950 NEIL2Q969S2 332 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 DCAF13Q9NV06 445 aaKnown RBP11.5□□□□□ -0.57
USP1-201ENST00000339950 RLFQ13129 1914 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 A0A1B0GVC2 190 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 A6NIN4 97 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 GABRR3A8MPY1 467 aa11.5□□□□□ -0.57
USP1-201ENST00000339950 SLC31A1O15431 190 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms