RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 OR4F3Q6IEY1 312 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 PSRC1Q6PGN9 363 aaPredicted RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 ZNF598Q86UK7 904 aaKnown RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 IGFN1Q86VF2 1251 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 SNX29P2Q8IUI4 249 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 PLD6Q8N2A8 252 aaKnown RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 WDTC1Q8N5D0 677 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 DENND6BQ8NEG7 585 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 OR10G6Q8NH81 332 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 TSNAXQ99598 290 aaKnown RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 ZNF350Q9GZX5 532 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 IFT52Q9Y366 437 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 TRBC2A0A5B9 178 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 F7P08709 466 aaPredicted RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 G6PDP11413 515 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 BMP2P12643 396 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 AFF1P51825 1210 aaKnown RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 CRISP3P54108 245 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 EMX2Q04743 252 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 ATAT1Q5SQI0 421 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 TNFAIP8L2Q6P589 184 aaPredicted RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 LRRN1Q6UXK5 716 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 HACD2Q6Y1H2 254 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 AQP11Q8NBQ7 271 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 SH3RF2Q8TEC5 729 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 SAV1Q9H4B6 383 aaPredicted RBP11.16□□□□□ -0.62
VPS39-201ENST00000318006 PSAT1Q9Y617 370 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 MYH13Q9UKX3 1938 aa11.16□□□□□ -0.62
VPS39-201ENST00000318006 A0A1W2PRU2 124 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 BHMG1C9JSJ3 638 aaPredicted RBP11.15□□□□□ -0.62
VPS39-201ENST00000318006 GRK1Q15835 563 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 SLC30A6Q6NXT4 461 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 MAMDC4Q6UXC1 1216 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 GAB3Q8WWW8 586 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 TCEAL4Q96EI5 215 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 DPCDQ9BVM2 203 aaPredicted RBP11.15□□□□□ -0.62
VPS39-201ENST00000318006 PPIL3Q9H2H8 161 aaKnown RBP11.15□□□□□ -0.62
VPS39-201ENST00000318006 FOLH1BQ9HBA9 442 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 A0A1W2PRB8 838 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 KHKP50053 298 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 BMXP51813 675 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 S100A12P80511 92 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 PTGR1Q14914 329 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 LAPTM4AQ15012 233 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 SF1Q15637 639 aaKnown RBP11.15□□□□□ -0.62
VPS39-201ENST00000318006 C2orf73Q8N5S3 287 aaPredicted RBP11.15□□□□□ -0.62
VPS39-201ENST00000318006 DEDD2Q8WXF8 326 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 CDADC1Q9BWV3 514 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 EXTL2Q9UBQ6 330 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 ERVW-1Q9UQF0 538 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 MYH6P13533 1939 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 TTC24A2A3L6 582 aaPredicted RBP11.15□□□□□ -0.62
VPS39-201ENST00000318006 LRRN3E7EW58 273 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 ENPP3O14638 875 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 TLX2O43763 284 aaPredicted RBP11.15□□□□□ -0.62
VPS39-201ENST00000318006 PRMT3O60678 531 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 NIPSNAP2O75323 286 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 GATBO75879 557 aaKnown RBP11.15□□□□□ -0.62
VPS39-201ENST00000318006 SLC11A1P49279 550 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 TMEM220Q6QAJ8 160 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 ALDH16A1Q8IZ83 802 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 Q8N402 240 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 OR10Q1Q8NGQ4 319 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 OR10T2Q8NGX3 314 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 KXD1Q9BQD3 176 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 LRRN3Q9H3W5 708 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 FAM118AQ9NWS6 357 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 MS4A12Q9NXJ0 267 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 SLC2A6Q9UGQ3 507 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 HCN4Q9Y3Q4 1203 aa11.15□□□□□ -0.62
VPS39-201ENST00000318006 MARF1Q9Y4F3 1742 aaKnown RBP11.15□□□□□ -0.63
VPS39-201ENST00000318006 SLC1A7O00341 560 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 KIAA0513O60268 411 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 ACRP10323 421 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 LHCGRP22888 699 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 NR4A2P43354 598 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 MAGEA11P43364 429 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 FNTBP49356 437 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 CLK3P49761 638 aaKnown RBP11.15□□□□□ -0.63
VPS39-201ENST00000318006 RPL19P84098 196 aaKnown RBP11.15□□□□□ -0.63
VPS39-201ENST00000318006 NDUFA9Q16795 377 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 CARD16Q5EG05 197 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 UBQLNLQ8IYU4 475 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 OR8J3Q8NGG0 315 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 ZBED6CLQ96FA7 236 aaPredicted RBP11.15□□□□□ -0.63
VPS39-201ENST00000318006 SPACA7Q96KW9 195 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 PKP4Q99569 1192 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 BTBD1Q9H0C5 482 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 SUV39H2Q9H5I1 410 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 BEX1Q9HBH7 125 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 CTPS2Q9NRF8 586 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 ERVK13-1Q9NX77 482 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 TAS2R10Q9NYW0 307 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 CEPT1Q9Y6K0 416 aa11.15□□□□□ -0.63
VPS39-201ENST00000318006 C4BP0C0L5 1744 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 STRCQ7RTU9 1775 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 PCDH7O60245 1069 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 FSHRP23945 695 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 DSTNP60981 165 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 RAB5BP61020 215 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms