RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PWP1Q13610 501 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 FAM153CQ494X1 144 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 PRAMEF9Q5VWM5 478 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 PRSS41Q7RTY9 318 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 ANKRD53Q8N9V6 530 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 KCT2Q8NC54 265 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 NT5CQ8TCD5 201 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 NXNL1Q96CM4 212 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 WDR34Q96EX3 536 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 CNOT10Q9H9A5 744 aaKnown RBP15.32■□□□□ 0.04
TRIM28-213ENST00000598355 SEMA3GQ9NS98 782 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 C14orf105Q9NVL8 296 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 WWOXQ9NZC7 414 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 ZNF282Q9UDV7 671 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-213ENST00000598355 ZFP69BQ9UJL9 534 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 RNF112Q9ULX5 631 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 HS3ST3B1Q9Y662 390 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 SLC22A7Q9Y694 548 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 SCN2AQ99250 2005 aa15.32■□□□□ 0.04
TRIM28-213ENST00000598355 CPAMD8Q8IZJ3 1885 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 A0A096LPK6 155 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 A0A0A6YYC8 382 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-213ENST00000598355 B8ZZF3 427 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 MKRN2OSH3BPM6 223 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 I3L1I5 382 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-213ENST00000598355 SOCS6O14544 535 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 RIPK2O43353 540 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 KLK8O60259 260 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 ZGLP1P0C6A0 271 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 MYBL2P10244 700 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 CNTFP26441 200 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 GCAP28676 217 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 OTX2P32243 289 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 RRADP55042 308 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 SOX8P57073 446 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 KLC1Q07866 573 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 PCDH1Q08174 1060 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 CHAF1BQ13112 559 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 UAP1Q16222 522 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-213ENST00000598355 ATG9BQ674R7 924 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 LRRC70Q7Z2Q7 622 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 ZC3H7AQ8IWR0 971 aaKnown RBP15.31■□□□□ 0.04
TRIM28-213ENST00000598355 SLC13A3Q8WWT9 602 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 MRRFQ96E11 262 aaKnown RBP15.31■□□□□ 0.04
TRIM28-213ENST00000598355 AIF1LQ9BQI0 150 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 SLC6A16Q9GZN6 736 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 PITHD1Q9GZP4 211 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-213ENST00000598355 MKKSQ9NPJ1 570 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-213ENST00000598355 DNAJC11Q9NVH1 559 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 P4HTMQ9NXG6 502 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 FETUBQ9UGM5 382 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 ASB1Q9Y576 335 aa15.31■□□□□ 0.04
TRIM28-213ENST00000598355 AGPSO00116 658 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 OR1F1O43749 312 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 STK16O75716 305 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 KLHL2O95198 593 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 IGHEP01854 428 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 STATHP02808 62 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 CYC1P08574 325 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 C1GALT1C1LP0DN25 315 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 GSTM2P28161 218 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 HSPA7P48741 367 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 EFNA3P52797 238 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 HYAL2Q12891 473 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 NFATC3Q12968 1075 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 ACAP2Q15057 778 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 FAM83EQ2M2I3 478 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 LACTB2Q53H82 288 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-213ENST00000598355 TECRLQ5HYJ1 363 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 DCAF10Q5QP82 559 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 PDSS2Q86YH6 399 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 TBC1D19Q8N5T2 526 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 OR9A4Q8NGU2 314 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 COL26A1Q96A83 441 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 MIEF2Q96C03 454 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 MOCOSQ96EN8 888 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 MMABQ96EY8 250 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-213ENST00000598355 SEC16BQ96JE7 1060 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 MACROD1Q9BQ69 325 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 CAPS2Q9BXY5 557 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 SOX17Q9H6I2 414 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-213ENST00000598355 NT5DC2Q9H857 520 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 ACSS2Q9NR19 701 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 CD274Q9NZQ7 290 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 TP53TG5Q9Y2B4 290 aa15.3■□□□□ 0.04
TRIM28-213ENST00000598355 K7EM74 188 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 UBXN8O00124 270 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 NDUFS4O43181 175 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 KRT38O76015 456 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 PDGFAP04085 211 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 IL1RNP18510 177 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 CD22P20273 847 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 VARSP26640 1264 aaKnown RBP15.29■□□□□ 0.04
TRIM28-213ENST00000598355 TYK2P29597 1187 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 AVPR1BP47901 424 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 OCA2Q04671 838 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 NAA30Q147X3 362 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-213ENST00000598355 PDK4Q16654 411 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 FBXO48Q5FWF7 155 aa15.29■□□□□ 0.04
TRIM28-213ENST00000598355 VWA2Q5GFL6 755 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms