RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CHST8Q9H2A9 424 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 MBNL1Q9NR56 388 aaKnown RBP19.5■□□□□ 0.71
CLN3-230ENST00000568076 SAMD4AQ9UPU9 718 aaKnown RBP19.5■□□□□ 0.71
CLN3-230ENST00000568076 UNC80Q8N2C7 3258 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 PI15O43692 258 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 ZNF682O95780 498 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 NUDT7P0C024 238 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 PRKACGP22612 351 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 ZNF763Q0D2J5 394 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 RPA4Q13156 261 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 CST6Q15828 149 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 HIST2H2ACQ16777 129 aaPredicted RBP19.49■□□□□ 0.71
CLN3-230ENST00000568076 PRAMEF14Q5SWL7 426 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 IER5LQ5T953 404 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 PRAMEF13Q5VWM6 474 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 HIST2H2AA3Q6FI13 130 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 VN1R5Q7Z5H4 357 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 ZDHHC21Q8IVQ6 265 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 PJA1Q8NG27 643 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 OR5K1Q8NHB7 308 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 ADAMTS16Q8TE57 1224 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 SETD7Q8WTS6 366 aaKnown RBP19.49■□□□□ 0.71
CLN3-230ENST00000568076 TFGQ92734 400 aaPredicted RBP19.49■□□□□ 0.71
CLN3-230ENST00000568076 POP5Q969H6 163 aaKnown RBP19.49■□□□□ 0.71
CLN3-230ENST00000568076 RAD51AP1Q96B01 352 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 MYADMQ96S97 322 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 AMBRA1Q9C0C7 1298 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 PTTG2Q9NZH5 202 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 SH3BP4Q9P0V3 963 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 ATP6V1HQ9UI12 483 aa19.49■□□□□ 0.71
CLN3-230ENST00000568076 CFAP20Q9Y6A4 193 aaKnown RBP19.49■□□□□ 0.71
CLN3-230ENST00000568076 DOCK8Q8NF50 2099 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 SEMG1P04279 462 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 KDELR2P33947 212 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 EIF2DP41214 584 aaKnown RBP19.48■□□□□ 0.71
CLN3-230ENST00000568076 ENPP2Q13822 863 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 MYBPC3Q14896 1274 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 RBBP5Q15291 538 aaKnown RBP19.48■□□□□ 0.71
CLN3-230ENST00000568076 C10orf62Q5T681 223 aaPredicted RBP19.48■□□□□ 0.71
CLN3-230ENST00000568076 CWF19L1Q69YN2 538 aaKnown RBP19.48■□□□□ 0.71
CLN3-230ENST00000568076 LRRTM4Q86VH4 590 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 SYNPOQ8N3V7 929 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 ZFP90Q8TF47 636 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 RSPH9Q9H1X1 276 aaPredicted RBP19.48■□□□□ 0.71
CLN3-230ENST00000568076 ABCG2Q9UNQ0 655 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 TDRKHQ9Y2W6 561 aaKnown RBP19.48■□□□□ 0.71
CLN3-230ENST00000568076 U3KQV3 271 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 XIRP2A4UGR9 3374 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 PCDH8O95206 1070 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 KELP23276 732 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 YAP1P46937 504 aaKnown RBP19.48■□□□□ 0.71
CLN3-230ENST00000568076 MC1RQ01726 317 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 ANXA8L1Q5VT79 327 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 ERICH5Q6P6B1 374 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 LCTLQ6UWM7 567 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 FAM129CQ86XR2 697 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 DCUN1D3Q8IWE4 304 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 YAF2Q8IY57 180 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 OXR1Q8N573 874 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 OR4K1Q8NGD4 311 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 SNX19Q92543 992 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 RDH12Q96NR8 316 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 RBM4BQ9BQ04 359 aaKnown RBP19.48■□□□□ 0.71
CLN3-230ENST00000568076 ACAT2Q9BWD1 397 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 RBM4Q9BWF3 364 aaKnown RBP19.48■□□□□ 0.71
CLN3-230ENST00000568076 REEP4Q9H6H4 257 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 FAM118AQ9NWS6 357 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 FZD4Q9ULV1 537 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 MAPRE3Q9UPY8 281 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 GMEB1Q9Y692 573 aa19.48■□□□□ 0.71
CLN3-230ENST00000568076 RNASET2O00584 256 aaKnown RBP19.47■□□□□ 0.71
CLN3-230ENST00000568076 ERGP11308 486 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 ELK4P28324 431 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 PIGAP37287 484 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 CCNYL2Q5T2Q4 361 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 METRNLQ641Q3 311 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 PARM1Q6UWI2 310 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 B3GNT6Q6ZMB0 384 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 VTCN1Q7Z7D3 282 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 METTL4Q8N3J2 472 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 VPS37AQ8NEZ2 397 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 CXorf40BQ96DE9 158 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 RPP25Q9BUL9 199 aaKnown RBP19.47■□□□□ 0.71
CLN3-230ENST00000568076 BHLHE41Q9C0J9 482 aaPredicted RBP19.47■□□□□ 0.71
CLN3-230ENST00000568076 LMAN2LQ9H0V9 348 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 IL1RAPQ9NPH3 570 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 OR1A2Q9Y585 309 aa19.47■□□□□ 0.71
CLN3-230ENST00000568076 RFXAPO00287 272 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 HOXB6P17509 224 aaKnown RBP19.46■□□□□ 0.71
CLN3-230ENST00000568076 PIK3CBP42338 1070 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 SOX9P48436 509 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 CRYBA2P53672 197 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 FGL2Q14314 439 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 RGNQ15493 299 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 MPEG1Q2M385 716 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 OR4A15Q8NGL6 344 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 OR5K2Q8NHB8 316 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 C16orf78Q8WTQ4 265 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 FGF14Q92915 247 aa19.46■□□□□ 0.71
CLN3-230ENST00000568076 CDCA3Q99618 268 aaPredicted RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms