RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 LETMD1Q6P1Q0 360 aa12.4□□□□□ -0.42
CCDC42-202ENST00000539522 ADCK2Q7Z695 626 aa12.4□□□□□ -0.42
CCDC42-202ENST00000539522 SYVN1Q86TM6 617 aa12.4□□□□□ -0.42
CCDC42-202ENST00000539522 ZFAND4Q86XD8 727 aa12.4□□□□□ -0.42
CCDC42-202ENST00000539522 DTX1Q86Y01 620 aa12.4□□□□□ -0.42
CCDC42-202ENST00000539522 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.4□□□□□ -0.42
CCDC42-202ENST00000539522 L3MBTL4Q8NA19 623 aa12.4□□□□□ -0.42
CCDC42-202ENST00000539522 MFSD9Q8NBP5 474 aa12.4□□□□□ -0.42
CCDC42-202ENST00000539522 EHD1Q9H4M9 534 aa12.4□□□□□ -0.42
CCDC42-202ENST00000539522 SEMA4BQ9NPR2 832 aaPredicted RBP12.4□□□□□ -0.42
CCDC42-202ENST00000539522 ACSL6Q9UKU0 697 aa12.4□□□□□ -0.42
CCDC42-202ENST00000539522 TMEM184BQ9Y519 407 aaPredicted RBP12.4□□□□□ -0.42
CCDC42-202ENST00000539522 PCDHGA7Q9Y5G6 932 aa12.4□□□□□ -0.42
CCDC42-202ENST00000539522 TNPO3Q9Y5L0 923 aaKnown RBP12.4□□□□□ -0.42
CCDC42-202ENST00000539522 LOC400499M0QZD8 3231 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 NDUFAB1O14561 156 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 TERTO14746 1132 aaKnown RBP12.39□□□□□ -0.43
CCDC42-202ENST00000539522 ZNF749O43361 778 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 DNAJB6O75190 326 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 SNNO75324 88 aaPredicted RBP12.39□□□□□ -0.43
CCDC42-202ENST00000539522 TGDSO95455 350 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 NTRK1P04629 796 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 EPB42P16452 691 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 HRH2P25021 359 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 SERPINB5P36952 375 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 SLC1A6P48664 564 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 ARL4DP49703 201 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 NAGLUP54802 743 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 ITGA1P56199 1179 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 NAA20P61599 178 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 CLCQ05315 142 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 SRSF6Q13247 344 aaKnown RBP12.39□□□□□ -0.43
CCDC42-202ENST00000539522 TBC1D25Q3MII6 688 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 XKR6Q5GH73 641 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 TCHHL1Q5QJ38 904 aaPredicted RBP12.39□□□□□ -0.43
CCDC42-202ENST00000539522 WASHC2DQ5SRD0 308 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 TMTC4Q5T4D3 741 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 ZCCHC23Q6ZST2 131 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 PRSS41Q7RTY9 318 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 PIGWQ7Z7B1 504 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 PPP1R3BQ86XI6 285 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 LAS2Q8IYD9 372 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 ZNF655Q8N720 491 aaPredicted RBP12.39□□□□□ -0.43
CCDC42-202ENST00000539522 KCT2Q8NC54 265 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 OR4F6Q8NGB9 312 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 TRPC4APQ8TEL6 797 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 NXPE2Q96DL1 559 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 PTCD3Q96EY7 689 aaKnown RBP12.39□□□□□ -0.43
CCDC42-202ENST00000539522 CNDP1Q96KN2 507 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 C7orf26Q96N11 449 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 NTMT1Q9BV86 223 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 B3GNT4Q9C0J1 378 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 C20orf27Q9GZN8 174 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 KLHL31Q9H511 634 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 NT5DC2Q9H857 520 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 ZNF395Q9H8N7 513 aaPredicted RBP12.39□□□□□ -0.43
CCDC42-202ENST00000539522 SLC22A11Q9NSA0 550 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 FGFR1OP2Q9NVK5 253 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 RARRES3Q9UL19 164 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 RUVBL1Q9Y265 456 aaKnown RBP12.39□□□□□ -0.43
CCDC42-202ENST00000539522 IGF2RP11717 2491 aa12.39□□□□□ -0.43
CCDC42-202ENST00000539522 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 FOXS1O43638 330 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 OR1F1O43749 312 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 NPHS1O60500 1241 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 SRPX2O60687 465 aaPredicted RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 KATNA1O75449 491 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 SCRG1O75711 98 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 OR2B3O76000 313 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 STK17BO94768 372 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 KIAA0754O94854 1291 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 SUPT7LO94864 414 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 B3GALT4O96024 378 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 CAPN1P07384 714 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 PIK3CGP48736 1102 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 FOXA1P55317 472 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 RAB15P59190 212 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 ABCE1P61221 599 aaKnown RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 RPS15AP62244 130 aaKnown RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 IRF8Q02556 426 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 TGIF1Q15583 401 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 ZC3H12BQ5HYM0 836 aaKnown RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 CFAP157Q5JU67 520 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 DCAF12Q5T6F0 453 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 GKAP1Q5VSY0 366 aaPredicted RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 GRHL2Q6ISB3 625 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 CEACAM20Q6UY09 585 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 ZNF517Q6ZMY9 492 aaPredicted RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 FRMD7Q6ZUT3 714 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 FAM47EQ6ZV65 393 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 PDSS2Q86YH6 399 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 CRLF3Q8IUI8 442 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 WDR20Q8TBZ3 569 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 PPP4R1Q8TF05 950 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 AGAP11Q8TF27 550 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 ZNF473Q8WTR7 871 aaKnown RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 KCNA7Q96RP8 456 aa12.38□□□□□ -0.43
CCDC42-202ENST00000539522 ELAC2Q9BQ52 826 aaKnown RBP12.38□□□□□ -0.43
CCDC42-202ENST00000539522 DRC3Q9H069 523 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms