RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SH3BP4Q9P0V3 963 aa12.69□□□□□ -0.38
LDLR-203ENST00000535915 ERVK-18Q9QC07 812 aa12.69□□□□□ -0.38
LDLR-203ENST00000535915 VPS4AQ9UN37 437 aa12.69□□□□□ -0.38
LDLR-203ENST00000535915 TPRKBQ9Y3C4 175 aa12.69□□□□□ -0.38
LDLR-203ENST00000535915 DGKBQ9Y6T7 804 aa12.69□□□□□ -0.38
LDLR-203ENST00000535915 TMEM247A6NEH6 219 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 M0QX08 132 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 BCAS1O75363 584 aaPredicted RBP12.68□□□□□ -0.38
LDLR-203ENST00000535915 DNAJB5O75953 348 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 ABCB1P08183 1280 aaPredicted RBP12.68□□□□□ -0.38
LDLR-203ENST00000535915 SYN1P17600 705 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 FSHRP23945 695 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 RPS13P62277 151 aaKnown RBP12.68□□□□□ -0.38
LDLR-203ENST00000535915 GRIN2CQ14957 1233 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 SPIN4Q56A73 249 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 ANGPTL8Q6UXH0 198 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 SLC16A12Q6ZSM3 486 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 CCDC80Q76M96 950 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 OR56A3Q8NH54 315 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 C17orf50Q8WW18 174 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 MAL2Q969L2 176 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 NEIL2Q969S2 332 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 WRAP53Q9BUR4 548 aaKnown RBP12.68□□□□□ -0.38
LDLR-203ENST00000535915 THUMPD1Q9NXG2 353 aaKnown RBP12.68□□□□□ -0.38
LDLR-203ENST00000535915 SCN3BQ9NY72 215 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 TBC1D14Q9P2M4 693 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 NFKBIL1Q9UBC1 381 aaPredicted RBP12.68□□□□□ -0.38
LDLR-203ENST00000535915 BTNL2Q9UIR0 455 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 ENPP5Q9UJA9 477 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 ITM2BQ9Y287 266 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 KCNE2Q9Y6J6 123 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 TSPAN11A1L157 253 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 HIDE1A8MVS5 230 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 MOSPD3O75425 235 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 JRKO75564 520 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 ZBTB11O95625 1053 aaPredicted RBP12.68□□□□□ -0.38
LDLR-203ENST00000535915 PTPN2P17706 415 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 DDX6P26196 483 aaKnown RBP eCLIP12.68□□□□□ -0.382e-8■■□□□ 14
LDLR-203ENST00000535915 HOXD12P35452 270 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 ITGA1P56199 1179 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 AQP6Q13520 282 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 NPTX1Q15818 432 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 ANXA8L1Q5VT79 327 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 LIPIQ6XZB0 460 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 Q6ZNX1 250 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 SYTL1Q8IYJ3 562 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 FAR1Q8WVX9 515 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 RORBQ92753 470 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 FAM83CQ9BQN1 747 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 CORO2BQ9UQ03 480 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 HSPE1-MOB4S4R3N1 261 aa12.68□□□□□ -0.38
LDLR-203ENST00000535915 C5orf42Q9H799 3197 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 C1orf226A1L170 272 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 H3BM21 787 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 J3QRK9 145 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 NPC1O15118 1278 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 PCDH7O60245 1069 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 IDSP22304 550 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 EPHA2P29317 976 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 MMP12P39900 470 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 ERVFC1P60507 584 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 GAB1Q13480 694 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 RGNQ15493 299 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.67□□□□□ -0.38
LDLR-203ENST00000535915 PLPP4Q5VZY2 271 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 ERAP2Q6P179 960 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 ANKRD13BQ86YJ7 626 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 SLC15A4Q8N697 577 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 OR4A15Q8NGL6 344 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 CHTF18Q8WVB6 975 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 SPATA9Q9BWV2 254 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 RUBCNLQ9H714 662 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 ADPRHL2Q9NX46 363 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 PCDHGB1Q9Y5G3 927 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 HCFC2Q9Y5Z7 792 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 CCDC88CQ9P219 2028 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 SUV39H1O43463 412 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 EFCAB14O75071 495 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 RHOP08100 348 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 PPIBP23284 216 aaKnown RBP12.67□□□□□ -0.38
LDLR-203ENST00000535915 HOXA9P31269 272 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 TIA1P31483 386 aaKnown RBP eCLIP12.67□□□□□ -0.381e-7■□□□□ 9.9
LDLR-203ENST00000535915 VEGFBP49765 207 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 CCR3P51677 355 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 MLLT10P55197 1068 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 SLC35A2P78381 396 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 ZNF77Q15935 545 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 LAIR1Q6GTX8 287 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 MED27Q6P2C8 311 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 CCDC81Q6ZN84 652 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 PIWIL3Q7Z3Z3 882 aaKnown RBP12.67□□□□□ -0.38
LDLR-203ENST00000535915 KLHDC8AQ8IYD2 350 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 ZNF540Q8NDQ6 660 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 ZFP90Q8TF47 636 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 MAPRE3Q9UPY8 281 aa12.67□□□□□ -0.38
LDLR-203ENST00000535915 ZBBXA8MT70 800 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 KPNA3O00505 521 aaPredicted RBP12.66□□□□□ -0.38
LDLR-203ENST00000535915 TPD52L2O43399 206 aaKnown RBP12.66□□□□□ -0.38
LDLR-203ENST00000535915 C9P02748 559 aa12.66□□□□□ -0.38
LDLR-203ENST00000535915 JUNDP17535 347 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms