RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MAPK1P28482 360 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 MAZP56270 477 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 DCDC1P59894 354 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 GRM1Q13255 1194 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 MTMR1Q13613 665 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 EMC2Q15006 297 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 DPYSL2Q16555 572 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 ALKAL2Q6UX46 152 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 OVCH2Q7RTZ1 564 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 LDB1Q86U70 411 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 ATCAYQ86WG3 371 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 SIAH1Q8IUQ4 282 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 TBC1D19Q8N5T2 526 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF548Q8NEK5 533 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 TCEAL3Q969E4 200 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 MRPL48Q96GC5 212 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF436Q9C0F3 470 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 ELOVL4Q9GZR5 314 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 QTRT2Q9H974 415 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 ZFR2Q9UPR6 939 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 CLCA2Q9UQC9 943 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 ERVW-1Q9UQF0 538 aa11.66□□□□□ -0.54
LIMCH1-213ENST00000511496 EIF1BO60739 113 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 SNAPINO95295 136 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 RHCEP18577 417 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 EIF1P41567 113 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 LIMK1P53667 647 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 RAB44Q7Z6P3 723 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 BEST4Q8NFU0 473 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 TSPEARQ8WU66 669 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 NSMAFQ92636 917 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 PYURFQ96I23 114 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 CMSS1Q9BQ75 279 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 TINF2Q9BSI4 451 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 ERVK-6Q9BXR3 956 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 FOLH1BQ9HBA9 442 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 FOCADQ5VW36 1801 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 NHSL1Q5SYE7 1610 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 OR6C65A6NJZ3 312 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 ABCD4O14678 606 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 GATCO43716 136 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 PSMA1P25786 263 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 PRDX3P30048 256 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 BAG6P46379 1132 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 AGFG1P52594 562 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 TGFB2P61812 414 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 CSNK2BP67870 215 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 DOC2BQ14184 412 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 MPEG1Q2M385 716 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 GTDC1Q4AE62 458 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 ZNF667Q5HYK9 610 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 FAM171A1Q5VUB5 890 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 XRRA1Q6P2D8 792 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 STX12Q86Y82 276 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 EMID1Q96A84 441 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 SCRN2Q96FV2 425 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 ARL5BQ96KC2 179 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 SFXN2Q96NB2 322 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 WDFY2Q96P53 400 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 ATXN3LQ9H3M9 355 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 PRDM9Q9NQV7 894 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 DCAF13Q9NV06 445 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 MS4A12Q9NXJ0 267 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 MIOXQ9UGB7 285 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 SRRDQ9UH36 339 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 DERAQ9Y315 318 aa11.65□□□□□ -0.54
LIMCH1-213ENST00000511496 OR1I1O60431 355 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 HTR3BO95264 441 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 CXCL14O95715 111 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 HK1P19367 917 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 PTPN3P26045 913 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 RTP2Q5QGT7 225 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 BICRALQ6AI39 1079 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 SLFN12LQ6IEE8 588 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 SPATA19Q7Z5L4 167 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 MILR1Q7Z6M3 343 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 PIM3Q86V86 326 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 OR5T2Q8NGG2 359 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 OR9Q1Q8NGQ5 310 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 OR6S1Q8NH40 331 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 ADAMTS14Q8WXS8 1223 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 BEX1Q9HBH7 125 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 ZNF275Q9NSD4 429 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 BABAM2Q9NXR7 383 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 USP21Q9UK80 565 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 PRKAB1Q9Y478 270 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 BPTFQ12830 3046 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 RRN3P2A6NIE6 340 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 POP7O75817 140 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 SIX6O95475 246 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 LALBAP00709 142 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 RPS17P08708 135 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 ACAA1P09110 424 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 HLA-EP13747 358 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 BMP8BP34820 402 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 IKZF1Q13422 519 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 PWP1Q13610 501 aa11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 RBMS2Q15434 407 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-213ENST00000511496 HTR3DQ70Z44 454 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms