RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SEMA4BQ9NPR2 832 aaPredicted RBP9.6□□□□□ -0.87
NUP54-203ENST00000504173 ACSS2Q9NR19 701 aa9.6□□□□□ -0.87
NUP54-203ENST00000504173 FGF21Q9NSA1 209 aa9.6□□□□□ -0.87
NUP54-203ENST00000504173 OXSMQ9NWU1 459 aa9.6□□□□□ -0.87
NUP54-203ENST00000504173 IRAK4Q9NWZ3 460 aa9.6□□□□□ -0.87
NUP54-203ENST00000504173 SLC39A1Q9NY26 324 aa9.6□□□□□ -0.87
NUP54-203ENST00000504173 NKIRAS1Q9NYS0 192 aa9.6□□□□□ -0.87
NUP54-203ENST00000504173 RARRES3Q9UL19 164 aa9.6□□□□□ -0.87
NUP54-203ENST00000504173 F8P00451 2351 aa9.6□□□□□ -0.87
NUP54-203ENST00000504173 CACNA1DQ01668 2161 aa9.6□□□□□ -0.87
NUP54-203ENST00000504173 HEATR5BQ9P2D3 2071 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 CRYBG3Q68DQ2 2970 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 TRBC2A0A5B9 178 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 TMEM150CB9EJG8 249 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 POLR1CO15160 346 aaPredicted RBP9.59□□□□□ -0.87
NUP54-203ENST00000504173 TNFSF15O95150 251 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 ITGB2P05107 769 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 BPGMP07738 259 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 TSPAN8P19075 237 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 CXCR2P25025 360 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 VARSP26640 1264 aaKnown RBP9.59□□□□□ -0.87
NUP54-203ENST00000504173 ALDH3A1P30838 453 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 ETV4P43268 484 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 SERPINB4P48594 390 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 CCNG1P51959 295 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 NAGLUP54802 743 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 CDH13P55290 713 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 RAB15P59190 212 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 DNAJB13P59910 316 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 RPS15AP62244 130 aaKnown RBP9.59□□□□□ -0.87
NUP54-203ENST00000504173 REEP5Q00765 189 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 MC2RQ01718 297 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 MEF2AQ02078 507 aaPredicted RBP9.59□□□□□ -0.87
NUP54-203ENST00000504173 RELAQ04206 551 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 CLCQ05315 142 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 CHIT1Q13231 466 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 MPP2Q14168 576 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 DOC2AQ14183 400 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 SLBPQ14493 270 aaKnown RBP eCLIP9.59□□□□□ -0.87
NUP54-203ENST00000504173 UNC50Q53HI1 259 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 HSP90B2PQ58FF3 399 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 PAGE2BQ5JRK9 111 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 CFAP157Q5JU67 520 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 HHATQ5VTY9 493 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 FBXO42Q6P3S6 717 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 IGF2-ASQ6U949 168 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 CEACAM20Q6UY09 585 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 RPS27LQ71UM5 84 aaKnown RBP9.59□□□□□ -0.87
NUP54-203ENST00000504173 RNF44Q7L0R7 432 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 MYLK4Q86YV6 388 aaPredicted RBP9.59□□□□□ -0.87
NUP54-203ENST00000504173 MCATQ8IVS2 390 aaKnown RBP9.59□□□□□ -0.87
NUP54-203ENST00000504173 KRT78Q8N1N4 520 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 MGARPQ8TDB4 240 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 TRPC4APQ8TEL6 797 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 RERGQ96A58 199 aaPredicted RBP9.59□□□□□ -0.87
NUP54-203ENST00000504173 PTCD3Q96EY7 689 aaKnown RBP9.59□□□□□ -0.87
NUP54-203ENST00000504173 FCRL4Q96PJ5 515 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 TAAR9Q96RI9 348 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 CTRCQ99895 268 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 PAIP2Q9BPZ3 127 aaKnown RBP9.59□□□□□ -0.87
NUP54-203ENST00000504173 MECRQ9BV79 373 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 C1QTNF3Q9BXJ4 246 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 SPNS1Q9H2V7 528 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 EHD1Q9H4M9 534 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 ACTR8Q9H981 624 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 APMAPQ9HDC9 416 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 PRM3Q9NNZ6 103 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 MLXIPLQ9NP71 852 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 ASCL3Q9NQ33 180 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 FBXO8Q9NRD0 319 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 SERTAD3Q9UJW9 196 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 PCDHGA8Q9Y5G5 932 aa9.59□□□□□ -0.87
NUP54-203ENST00000504173 FEZF1A0PJY2 475 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 WDR91A4D1P6 747 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 H0YGG7 62 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 HCRTR1O43613 425 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 OR1F1O43749 312 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 PRAMEF4O60810 478 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 TRIM13O60858 407 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 OR2B3O76000 313 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 MLYCDO95822 493 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 OTCP00480 354 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 MSL3P1P0C860 447 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 DHRS4L1P0CG22 281 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 NEFHP12036 1026 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 RBMS1P29558 406 aaKnown RBP9.58□□□□□ -0.88
NUP54-203ENST00000504173 BCL6P41182 706 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 GABRA4P48169 554 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 SLC18A1P54219 525 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 ITGA1P56199 1179 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 VSX2P58304 361 aaPredicted RBP9.58□□□□□ -0.88
NUP54-203ENST00000504173 ARF3P61204 181 aaPredicted RBP9.58□□□□□ -0.88
NUP54-203ENST00000504173 NAA20P61599 178 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 GPS2Q13227 327 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 LAPTM5Q13571 262 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 IL11RAQ14626 422 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 RBBP5Q15291 538 aaKnown RBP9.58□□□□□ -0.88
NUP54-203ENST00000504173 TBCCQ15814 346 aa9.58□□□□□ -0.88
NUP54-203ENST00000504173 HIST2H2ACQ16777 129 aaPredicted RBP9.58□□□□□ -0.88
NUP54-203ENST00000504173 TCTE1Q5JU00 501 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms