RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 HTRA1Q92743 480 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 ZNF597Q96LX8 424 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 DEPDC7Q96QD5 511 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 OR6A2O95222 327 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 C1GALT1C1LP0DN25 315 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 UQCRC2P22695 453 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 TIE1P35590 1138 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 RBBP4Q09028 425 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 C6orf141Q5SZD1 244 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 PIANPQ8IYJ0 282 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 SMYD1Q8NB12 490 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 FAM98AQ8NCA5 519 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 DNASE1L2Q92874 299 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 PDLIM5Q96HC4 596 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 C3orf30Q96M34 536 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 FAM210AQ96ND0 272 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 COL21A1Q96P44 957 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 FCRL4Q96PJ5 515 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 BHLHE41Q9C0J9 482 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 LIN28AQ9H9Z2 209 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 IL26Q9NPH9 171 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 FAM118AQ9NWS6 357 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 TVP23BQ9NYZ1 205 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 NME7Q9Y5B8 376 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 IGLV3-10A0A075B6K4 115 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 LRRC72A6NJI9 287 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 TOR1BO14657 336 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 AREL1O15033 823 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 DIRAS1O95057 198 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 AGR2O95994 175 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 RHOP08100 348 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 HNRNPA1P09651 372 aaKnown RBP eCLIP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 CSNK2A2P19784 350 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 GUCA1AP43080 201 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 TXNL4AP83876 142 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 ZNF155Q12901 538 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 ILF3Q12906 894 aaKnown RBP eCLIP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 FADDQ13158 208 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 NDUFA9Q16795 377 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 OR52E8Q6IFG1 317 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 SH2D5Q6ZV89 423 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 TSPAN33Q86UF1 283 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 PGBD5Q8N414 524 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 PNPLA1Q8N8W4 532 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 DOHHQ9BU89 302 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 CNPPD1Q9BV87 410 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 HSPE1-MOB4S4R3N1 261 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 ARNTLO00327 626 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 SRCP12931 536 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 ATF6P18850 670 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 CPN2P22792 545 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 CLCNKAP51800 687 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 BIKQ13323 160 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 CTSL3PQ5NE16 218 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 RNF130Q86XS8 419 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 CPXM2Q8N436 756 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 ZNF513Q8N8E2 541 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 PHF12Q96QT6 1004 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 UCK2Q9BZX2 261 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 HEBP1Q9NRV9 189 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 AGPAT4Q9NRZ5 378 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 CFL2Q9Y281 166 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 SCAMP2O15127 329 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 UGDHO60701 494 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 GABBR2O75899 941 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 LRRC32Q14392 662 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 PON2Q15165 354 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 ENPP6Q6UWR7 440 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 KLHDC9Q8NEP7 349 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 TAMM41Q96BW9 452 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 UTS2RQ9UKP6 389 aa10.41□□□□□ -0.74
LIMCH1-205ENST00000503057 IDH3BO43837 385 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 RETP07949 1114 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 SAGP10523 405 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 SEPHS1P49903 392 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 GPM6BQ13491 265 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 SLC39A5Q6ZMH5 540 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 TICAM1Q8IUC6 712 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 AQP11Q8NBQ7 271 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 CAPSLQ8WWF8 208 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 NR4A3Q92570 626 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 UFD1Q92890 307 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 KLHL42Q9P2K6 505 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 MRTO4Q9UKD2 239 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 HCN4Q9Y3Q4 1203 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 TGM5O43548 720 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 TPST2O60704 377 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 JUNP05412 331 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 KDELR2P33947 212 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 RORCP51449 518 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 MPP7Q5T2T1 576 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 REEP3Q6NUK4 255 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 ZNF296Q8WUU4 475 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 RAB7BQ96AH8 199 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 ISG20Q96AZ6 181 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 FBXL8Q96CD0 374 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 ALPK1Q96QP1 1244 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 DCSTAMPQ9H295 470 aa10.4□□□□□ -0.74
LIMCH1-205ENST00000503057 DLGAP4Q9Y2H0 992 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms