RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 RAP2CQ9Y3L5 183 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 PCDHGA11Q9Y5H2 935 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 SPTBN4Q9H254 2564 aa12.97□□□□□ -0.33
CPNE1-227ENST00000498056 CCDC88CQ9P219 2028 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 LOC105369274A0A096LPK9 316 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 LOC102723532A0A0G2JNH3 316 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 H0YIV9 168 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 MANBAO00462 879 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 PLD2O14939 933 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 SH3BGRLO75368 114 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 OR2B3O76000 313 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 SNUPNO95149 360 aaKnown RBP12.96□□□□□ -0.33
CPNE1-227ENST00000498056 CTSBP07858 339 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 KITP10721 976 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 UROSP10746 265 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 GSTM2P28161 218 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 AHRP35869 848 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 MDH1P40925 334 aaKnown RBP12.96□□□□□ -0.33
CPNE1-227ENST00000498056 ID4P47928 161 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 GABRA4P48169 554 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 ITGA1P56199 1179 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 OCRLQ01968 901 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 RGS1Q08116 209 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 EIF3IQ13347 325 aaKnown RBP12.96□□□□□ -0.33
CPNE1-227ENST00000498056 PDCD2Q16342 344 aaPredicted RBP12.96□□□□□ -0.33
CPNE1-227ENST00000498056 HKDC1Q2TB90 917 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 TOR1AIP1Q5JTV8 583 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 KANK2Q63ZY3 851 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 ATG14Q6ZNE5 492 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 VN1R4Q7Z5H5 301 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 PPP1R3BQ86XI6 285 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 DDIASQ8IXT1 998 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 LAS2Q8IYD9 372 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 OR4N4Q8N0Y3 316 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 RNF175Q8N4F7 328 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 TTC29Q8NA56 475 aaPredicted RBP12.96□□□□□ -0.33
CPNE1-227ENST00000498056 OR1L3Q8NH93 324 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 HUS1BQ8NHY5 278 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 WDR36Q8NI36 951 aaKnown RBP12.96□□□□□ -0.33
CPNE1-227ENST00000498056 TWIST2Q8WVJ9 160 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 ZNF501Q96CX3 271 aaPredicted RBP12.96□□□□□ -0.33
CPNE1-227ENST00000498056 MTFMTQ96DP5 389 aaKnown RBP12.96□□□□□ -0.33
CPNE1-227ENST00000498056 THAP11Q96EK4 314 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 OR2A5Q96R48 311 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 MACROD1Q9BQ69 325 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 SLC7A5P2Q9GIP4 190 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 CHRNA10Q9GZZ6 450 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 NT5DC2Q9H857 520 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 APMAPQ9HDC9 416 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 SLCO1B3Q9NPD5 702 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 DMRT3Q9NQL9 472 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 FARSBQ9NSD9 589 aaKnown RBP12.96□□□□□ -0.33
CPNE1-227ENST00000498056 STARD5Q9NSY2 213 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 ZNF490Q9ULM2 529 aaPredicted RBP12.96□□□□□ -0.33
CPNE1-227ENST00000498056 AP1M2Q9Y6Q5 423 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 SPTBN2O15020 2390 aa12.96□□□□□ -0.33
CPNE1-227ENST00000498056 DCHS1Q96JQ0 3298 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 TCP11X1B4DZS4 312 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 ZSCAN9O15535 394 aaPredicted RBP12.95□□□□□ -0.34
CPNE1-227ENST00000498056 PDYNP01213 254 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 MSL3P1P0C860 447 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 SERPINB3P29508 390 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 SERPINB1P30740 379 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 ETV5P41161 510 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 NEK2P51955 445 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 RPS13P62277 151 aaKnown RBP12.95□□□□□ -0.34
CPNE1-227ENST00000498056 GABREP78334 506 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 IMPG1Q17R60 797 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 FBXO42Q6P3S6 717 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 SCIMPQ6UWF3 145 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 TMPRSS7Q7RTY8 843 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 DGLUCYQ7Z3D6 616 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 VN1R5Q7Z5H4 357 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 CRLF3Q8IUI8 442 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 TMEM126BQ8IUX1 230 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 BMPERQ8N8U9 685 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 CAMKVQ8NCB2 501 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 TRPV3Q8NET8 790 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 WDR20Q8TBZ3 569 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 SLC13A3Q8WWT9 602 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 PMEPA1Q969W9 287 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 PPP1R36Q96LQ0 422 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 C7orf26Q96N11 449 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 SARGQ9BW04 601 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 ILKAPQ9H0C8 392 aaPredicted RBP12.95□□□□□ -0.34
CPNE1-227ENST00000498056 SLC39A1Q9NY26 324 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 ZDHHC2Q9UIJ5 367 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 RUVBL1Q9Y265 456 aaKnown RBP12.95□□□□□ -0.34
CPNE1-227ENST00000498056 PTGDR2Q9Y5Y4 395 aa12.95□□□□□ -0.34
CPNE1-227ENST00000498056 MAGEB17A8MXT2 336 aa12.94□□□□□ -0.34
CPNE1-227ENST00000498056 B4E171 279 aa12.94□□□□□ -0.34
CPNE1-227ENST00000498056 PIP5K1BO14986 540 aa12.94□□□□□ -0.34
CPNE1-227ENST00000498056 POLR1CO15160 346 aaPredicted RBP12.94□□□□□ -0.34
CPNE1-227ENST00000498056 CLEC3AO75596 197 aa12.94□□□□□ -0.34
CPNE1-227ENST00000498056 VIMP08670 466 aaKnown RBP12.94□□□□□ -0.34
CPNE1-227ENST00000498056 ATXN8OSP0DMR3 200 aa12.94□□□□□ -0.34
CPNE1-227ENST00000498056 TSPAN7P41732 249 aa12.94□□□□□ -0.34
CPNE1-227ENST00000498056 RPL14P50914 215 aaKnown RBP12.94□□□□□ -0.34
CPNE1-227ENST00000498056 RAP1GDS1P52306 607 aa12.94□□□□□ -0.34
CPNE1-227ENST00000498056 RAB15P59190 212 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms