RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	CHMP2B	Q9UQN3	213 aa		11.77	□□□□□ -0.53
SREBF1-215	ENST00000487401	SH2B3	Q9UQQ2	575 aa		11.77	□□□□□ -0.53
SREBF1-215	ENST00000487401	IGHV3-20	A0A0C4DH32	117 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	E2F3	O00716	465 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	RDH16	O75452	317 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	GUCA1C	O95843	209 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	TSPAN12	O95859	305 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	SERPIND1	P05546	499 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	SAT1	P21673	171 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	IL10	P22301	178 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	IVD	P26440	423 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	AGTR2	P50052	363 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	GNG11	P61952	73 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	SNRPN	P63162	240 aa	Known RBP	11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	SKP1	P63208	163 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	ZNF33B	Q06732	778 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	CSHL1	Q14406	222 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	HERC3	Q15034	1050 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	BTBD16	Q32M84	506 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	HIBCH	Q6NVY1	386 aa	Predicted RBP	11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	KCT2	Q8NC54	265 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	ABHD11	Q8NFV4	315 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	OR56A3	Q8NH54	315 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	PYCR2	Q96C36	320 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	FBXL8	Q96CD0	374 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	PWWP2A	Q96N64	755 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	NAALAD2	Q9Y3Q0	740 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	DYRK1B	Q9Y463	629 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	SLC22A7	Q9Y694	548 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	SEC16A	O15027	2179 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	UTP20	O75691	2785 aa	Known RBP	11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	TNRC6A	Q8NDV7	1962 aa	Known RBP	11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	NAV2	Q8IVL1	2488 aa		11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	RP1L1	Q8IWN7	2480 aa	Predicted RBP	11.76	□□□□□ -0.53
SREBF1-215	ENST00000487401	DOPEY2	Q9Y3R5	2298 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	TRBC2	A0A5B9	178 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	OR5H15	A6NDH6	313 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	OR2W5	A6NFC9	320 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	NDUFS4	O43181	175 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	CLDN1	O95832	211 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	ENO2	P09104	434 aa	Predicted RBP	11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	PAFAH1B1	P43034	410 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	EFNA3	P52797	238 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	PGGT1B	P53609	377 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	ITGA8	P53708	1063 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	MEF2A	Q02078	507 aa	Predicted RBP	11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	RGS1	Q08116	209 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	MGAT5	Q09328	741 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	PWP1	Q13610	501 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	FRG1	Q14331	258 aa	Known RBP	11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	NSDHL	Q15738	373 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	INA	Q16352	499 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	EXT1	Q16394	746 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	STEAP4	Q687X5	459 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	PLAG1	Q6DJT9	500 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	TRMT10B	Q6PF06	316 aa	Known RBP	11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	LANCL3	Q6ZV70	420 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	ANKRD37	Q7Z713	158 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	PDSS2	Q86YH6	399 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	ANKMY2	Q8IV38	441 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	OR4K1	Q8NGD4	311 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	SLC5A11	Q8WWX8	675 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	TRIM44	Q96DX7	344 aa	Predicted RBP	11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	PEX11G	Q96HA9	241 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	PDLIM5	Q96HC4	596 aa	Known RBP	11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	ZNF354B	Q96LW1	612 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	OLFM1	Q99784	485 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	SLX1A	Q9BQ83	275 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	TRIM31	Q9BZY9	425 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	RNF32	Q9H0A6	362 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	KCNF1	Q9H3M0	494 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	KCNK13	Q9HB14	408 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	PLAC1	Q9HBJ0	212 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	ZFAT	Q9P243	1243 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	ABI3	Q9P2A4	366 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	SAR1B	Q9Y6B6	198 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401	MED13	Q9UHV7	2174 aa		11.75	□□□□□ -0.53
SREBF1-215	ENST00000487401		A0A1B0GUH1	482 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	ZNF860	A6NHJ4	632 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	ESPN	B1AK53	854 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	PRAMEF2	O60811	474 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	CDC123	O75794	336 aa	Predicted RBP	11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	RASAL1	O95294	804 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	CRYAB	P02511	175 aa	Known RBP	11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	ALOX12	P18054	663 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	COL8A1	P27658	744 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	ABRAXAS2	Q15018	415 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	CATSPERE	Q5SY80	951 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	NIPAL1	Q6NVV3	410 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	ABHD13	Q7L211	337 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	STRA8	Q7Z7C7	330 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	CREG2	Q8IUH2	290 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	NKAP	Q8N5F7	415 aa	Known RBP	11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	PLPP5	Q8NEB5	264 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	DNAJB8	Q8NHS0	232 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	M1AP	Q8TC57	530 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	NR4A3	Q92570	626 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	OR4K3	Q96R72	315 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	OR1F2P	Q96R84	312 aa		11.74	□□□□□ -0.53
SREBF1-215	ENST00000487401	TAAR6	Q96RI8	345 aa		11.74	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms