RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 FKBP10Q96AY3 582 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 MTBPQ96DY7 904 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 MOCOSQ96EN8 888 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 MMABQ96EY8 250 aaPredicted RBP14.04□□□□□ -0.16
USP4-212ENST00000486549 CD244Q9BZW8 370 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 FAM117AQ9C073 453 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 DRC3Q9H069 523 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 SOX17Q9H6I2 414 aaPredicted RBP14.04□□□□□ -0.16
USP4-212ENST00000486549 XPR1Q9UBH6 696 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 CDC14AQ9UNH5 594 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 MAN2B2Q9Y2E5 1009 aa14.04□□□□□ -0.16
USP4-212ENST00000486549 HEMK1Q9Y5R4 338 aaPredicted RBP14.04□□□□□ -0.16
USP4-212ENST00000486549 SMG1Q96Q15 3661 aaKnown RBP14.04□□□□□ -0.16
USP4-212ENST00000486549 BAHCC1Q9P281 2608 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 KALRNO60229 2985 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 MAP2K7O14733 419 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 FOXS1O43638 330 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 H2AFYO75367 372 aaKnown RBP14.03□□□□□ -0.16
USP4-212ENST00000486549 RFPL1O75677 317 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 KLF7O75840 302 aaPredicted RBP14.03□□□□□ -0.16
USP4-212ENST00000486549 FAM87AP0C7U9 286 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 C1GALT1C1LP0DN25 315 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 MTHFD2P13995 350 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 IL1RNP18510 177 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 CCR10P46092 362 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 SCTRP47872 440 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 TSNAXIP1Q2TAA8 658 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 XKR6Q5GH73 641 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 ATG9BQ674R7 924 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 SLCO4C1Q6ZQN7 724 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 PRSS41Q7RTY9 318 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 PRSS58Q8IYP2 241 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 ARHGEF39Q8N4T4 335 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 ANKRD53Q8N9V6 530 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 OR9A4Q8NGU2 314 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 OR2Y1Q8NGV0 311 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 UBTD2Q8WUN7 234 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 TM4SF19Q96DZ7 209 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 CAPS2Q9BXY5 557 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 PRM3Q9NNZ6 103 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 GEMIN8Q9NWZ8 242 aaKnown RBP14.03□□□□□ -0.16
USP4-212ENST00000486549 GPRC5BQ9NZH0 403 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 OPTCQ9UBM4 332 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 FETUBQ9UGM5 382 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 TUBD1Q9UJT1 453 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 ANGPTL3Q9Y5C1 460 aa14.03□□□□□ -0.16
USP4-212ENST00000486549 CCDC189A1A4V9 331 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 ARGFXA6NJG6 315 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 GOLGA8RI6L899 631 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 PRPF4O43172 522 aaKnown RBP eCLIP14.02□□□□□ -0.17
USP4-212ENST00000486549 ONECUT2O95948 504 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 RECKO95980 971 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 ALBP02768 609 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 CD63P08962 238 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 RBP1P09455 135 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 COL6A2P12110 1019 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 CXCR2P25025 360 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 HSD17B3P37058 310 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 AVPR1BP47901 424 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 POLE2P56282 527 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 MAT1AQ00266 395 aaKnown RBP14.02□□□□□ -0.17
USP4-212ENST00000486549 OCA2Q04671 838 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 RGS1Q08116 209 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 CHAF1BQ13112 559 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 DSG2Q14126 1118 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 SETDB1Q15047 1291 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 NKG7Q16617 165 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 SYT16Q17RD7 645 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 TMEM214Q6NUQ4 689 aaKnown RBP14.02□□□□□ -0.17
USP4-212ENST00000486549 RAB43Q86YS6 212 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.02□□□□□ -0.17
USP4-212ENST00000486549 KRT78Q8N1N4 520 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 ADAMTS17Q8TE56 1095 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 EPS8L3Q8TE67 593 aaKnown RBP14.02□□□□□ -0.17
USP4-212ENST00000486549 APOBEC4Q8WW27 367 aaKnown RBP14.02□□□□□ -0.17
USP4-212ENST00000486549 CCT6BQ92526 530 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 MVB12AQ96EY5 273 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 SARGQ9BW04 601 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 TRPC4Q9UBN4 977 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 ZNF282Q9UDV7 671 aaPredicted RBP14.02□□□□□ -0.17
USP4-212ENST00000486549 ZFP69BQ9UJL9 534 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 KCNMB2Q9Y691 235 aa14.02□□□□□ -0.17
USP4-212ENST00000486549 LRRC14BA6NHZ5 514 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 FOXO6A8MYZ6 492 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 J3QKU1 62 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 K7EPI3 171 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 SGK494L7N484 410 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 PRAMEF4O60810 478 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 SMIM24O75264 130 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 UMODP07911 640 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 PLA2G2AP14555 144 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 EPORP19235 508 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 AHRP35869 848 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 HNF4AP41235 474 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 ALDH18A1P54886 795 aaKnown RBP14.01□□□□□ -0.17
USP4-212ENST00000486549 IRF8Q02556 426 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 CHIT1Q13231 466 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 ATP1A4Q13733 1029 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 FAM53BQ14153 422 aa14.01□□□□□ -0.17
USP4-212ENST00000486549 DOC2AQ14183 400 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms