RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 B8ZZF3 427 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 FFAR3O14843 346 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 GPR42O15529 346 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 TAPBPO15533 448 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 KERAO60938 352 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 C1GALT1C1LP0DN25 315 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 MMP11P24347 488 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 CNTFP26441 200 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 GGT5P36269 586 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 SLC6A12P48065 614 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 GLRBP48167 497 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 SKP1P63208 163 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 IRF9Q00978 393 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 KLC1Q07866 573 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 DLG1Q12959 904 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 PWP1Q13610 501 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 VWA2Q5GFL6 755 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 MFSD4BQ5TF39 518 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 PRICKLE2Q7Z3G6 844 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 PTRH1Q86Y79 214 aaKnown RBP13.5□□□□□ -0.25
VAMP4-203ENST00000474047 KRT78Q8N1N4 520 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 LRRN4CLQ8ND94 238 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 ZNF740Q8NDX6 193 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 TRPV3Q8NET8 790 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 ESAMQ96AP7 390 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 NACC2Q96BF6 587 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 TM4SF19Q96DZ7 209 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 SPSB2Q99619 263 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 L2HGDHQ9H9P8 463 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 C14orf105Q9NVL8 296 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 GPRC5BQ9NZH0 403 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 ZFP69BQ9UJL9 534 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 TP53TG5Q9Y2B4 290 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 MRPS2Q9Y399 296 aaKnown RBP13.5□□□□□ -0.25
VAMP4-203ENST00000474047 MAP4K5Q9Y4K4 846 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 LOC400499M0QZD8 3231 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 HMX2A2RU54 273 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 URADA6NGE7 173 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 VSTM2BA6NLU5 285 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 H0YIG0 161 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 UBXN8O00124 270 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 FOXS1O43638 330 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 KLHL2O95198 593 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 NSA2O95478 260 aaKnown RBP13.5□□□□□ -0.25
VAMP4-203ENST00000474047 HEXBP07686 556 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 IL1RNP18510 177 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 VARSP26640 1264 aaKnown RBP13.5□□□□□ -0.25
VAMP4-203ENST00000474047 AHRP35869 848 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 PGDP52209 483 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 EMP2P54851 167 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 REEP5Q00765 189 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 HERC3Q15034 1050 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 ACAP2Q15057 778 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 PDK4Q16654 411 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 TMEM214Q6NUQ4 689 aaKnown RBP13.5□□□□□ -0.25
VAMP4-203ENST00000474047 TCTN3Q6NUS6 607 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 ASB18Q6ZVZ8 466 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 PPP1R32Q7Z5V6 425 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 PDPRQ8NCN5 879 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 CCT6BQ92526 530 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 SCYL1Q96KG9 808 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 CCDC77Q9BR77 488 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 TMEM79Q9BSE2 394 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 ATP13A2Q9NQ11 1180 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 C3orf18Q9UK00 162 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 PTBP2Q9UKA9 531 aaKnown RBP13.5□□□□□ -0.25
VAMP4-203ENST00000474047 ANGPTL3Q9Y5C1 460 aa13.5□□□□□ -0.25
VAMP4-203ENST00000474047 SGK494L7N484 410 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 AGPSO00116 658 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 ALDOAP04075 364 aaKnown RBP13.49□□□□□ -0.25
VAMP4-203ENST00000474047 ABHD2P08910 425 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 FAM153BP0C7A2 387 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 GFAPP14136 432 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 HNF4AP41235 474 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 SCTRP47872 440 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 KCNC1P48547 511 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 MAT1AQ00266 395 aaKnown RBP13.49□□□□□ -0.25
VAMP4-203ENST00000474047 HIST2H2ACQ16777 129 aaPredicted RBP13.49□□□□□ -0.25
VAMP4-203ENST00000474047 SYT16Q17RD7 645 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 FAM153CQ494X1 144 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 XKR6Q5GH73 641 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 DCAF10Q5QP82 559 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 IRAK1BP1Q5VVH5 260 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 ATG9BQ674R7 924 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 HIST2H2AA3Q6FI13 130 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 SLCO4C1Q6ZQN7 724 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 ABHD13Q7L211 337 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 KLHDC8AQ8IYD2 350 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 CENPLQ8N0S6 344 aaPredicted RBP13.49□□□□□ -0.25
VAMP4-203ENST00000474047 RHEBL1Q8TAI7 183 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 SARGQ9BW04 601 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 CD244Q9BZW8 370 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 SPNS1Q9H2V7 528 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 HCN3Q9P1Z3 774 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 OPTCQ9UBM4 332 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 ZNF180Q9UJW8 692 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 SLC22A7Q9Y694 548 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 ATMQ13315 3056 aa13.49□□□□□ -0.25
VAMP4-203ENST00000474047 SCN3AQ9NY46 2000 aa13.48□□□□□ -0.25
VAMP4-203ENST00000474047 CCDC189A1A4V9 331 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms