RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MAN1A2O60476 641 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 LILRB5O75023 590 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 XYLBO75191 536 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 INMTO95050 263 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 TGFB1P01137 390 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 SRPRAP08240 638 aaKnown RBP8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ITGAMP11215 1152 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ADH5P11766 374 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 TIA1P31483 386 aaKnown RBP eCLIP8.61□□□□□ -1.03
SYNE1-217ENST00000466159 FMO3P31513 532 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 DNAJA1P31689 397 aaKnown RBP8.61□□□□□ -1.03
SYNE1-217ENST00000466159 BMPR1AP36894 532 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ASMTP46597 345 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 MC1RQ01726 317 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 PCDH1Q08174 1060 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 RGNQ15493 299 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 IER5LQ5T953 404 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 LAIR1Q6GTX8 287 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 NPAS3Q8IXF0 933 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ZFP90Q8TF47 636 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 FBLIM1Q8WUP2 373 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 COQ8BQ96D53 544 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 OTUB2Q96DC9 234 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 RSPRY1Q96DX4 576 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ZFYVE19Q96K21 471 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 GABARAPL1Q9H0R8 117 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 TRIT1Q9H3H1 467 aaKnown RBP8.61□□□□□ -1.03
SYNE1-217ENST00000466159 PLGRKTQ9HBL7 147 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 WARS2Q9UGM6 360 aaKnown RBP8.61□□□□□ -1.03
SYNE1-217ENST00000466159 BTNL2Q9UIR0 455 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 AXIN1O15169 862 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 MAGEB3O15480 346 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 UGT2B11O75310 529 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ANGPTL1O95841 491 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF8P17098 575 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-217ENST00000466159 FPR1P21462 350 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 PCMT1P22061 227 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 HTR1BP28222 390 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 HOXA9P31269 272 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 VIPR2P41587 438 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 SLC6A11P48066 632 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ST8SIA6P61647 398 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 TOP3AQ13472 1001 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-217ENST00000466159 IL18R1Q13478 541 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 VEZF1Q14119 521 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 SLBPQ14493 270 aaKnown RBP eCLIP8.61□□□□□ -1.03
SYNE1-217ENST00000466159 IQCCQ4KMZ1 466 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 SPIN4Q56A73 249 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 RAET1GQ6H3X3 334 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 CAPN13Q6MZZ7 669 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ANGPTL8Q6UXH0 198 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF852Q6ZMS4 543 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ARMCX6Q7L4S7 300 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 B3GNT8Q7Z7M8 397 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 NRSN1Q8IZ57 195 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 VPS37AQ8NEZ2 397 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 OR4A15Q8NGL6 344 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 FAM81AQ8TBF8 368 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 HCAR2Q8TDS4 363 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 STARD8Q92502 1023 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 FKBP10Q96AY3 582 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 ARRDC3Q96B67 414 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 METTL2AQ96IZ6 378 aaKnown RBP8.61□□□□□ -1.03
SYNE1-217ENST00000466159 FUNDC2Q9BWH2 189 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 SPNS1Q9H2V7 528 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 OR51B5Q9H339 312 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 GPATCH2Q9NW75 528 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 SIRT5Q9NXA8 310 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 GALNT8Q9NY28 637 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 RAPGEFL1Q9UHV5 662 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 SNX5Q9Y5X3 404 aa8.61□□□□□ -1.03
SYNE1-217ENST00000466159 UNC80Q8N2C7 3258 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 TMEM229AB2RXF0 380 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 MMP20O60882 483 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 GCM2O75603 506 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 FGBP02675 491 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 HPCAL1P37235 193 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 GPR1P46091 355 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 GP2P55259 537 aaKnown RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 HBA1P69905 142 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 KCNJ10P78508 379 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 EMX1Q04741 257 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 TMED1Q13445 227 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 CAMK1Q14012 370 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 E2F2Q14209 437 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 SMN1Q16637 294 aaKnown RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 COX20Q5RI15 118 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 ANXA8L1Q5VT79 327 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 CRTC3Q6UUV7 619 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 COMMD6Q7Z4G1 85 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 TRMT11Q7Z4G4 463 aaKnown RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 CAMKMTQ7Z624 323 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 ZNF547Q8IVP9 402 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 SFTPA1Q8IWL2 248 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 C2orf73Q8N5S3 287 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 TTC29Q8NA56 475 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-217ENST00000466159 ATG16L2Q8NAA4 619 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 WDR48Q8TAF3 677 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 RAB2BQ8WUD1 216 aa8.6□□□□□ -1.03
SYNE1-217ENST00000466159 UBE2FQ969M7 185 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms