RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 FXNQ16595 210 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 KDM4DQ6B0I6 523 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 TSPAN33Q86UF1 283 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 OR5AK3PQ8NH89 298 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 TMEM203Q969S6 136 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 CITED4Q96RK1 184 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 MMP28Q9H239 520 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 KLHL3Q9UH77 587 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 DUSP12Q9UNI6 340 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 VPS9D1Q9Y2B5 631 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 KNL1Q8NG31 2342 aa12.01□□□□□ -0.49
HDAC4-208ENST00000463007 RFXAPO00287 272 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 WWP2O00308 870 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 SLC28A1O00337 649 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 SAP18O00422 153 aaKnown RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 KIAA0513O60268 411 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 SSTR4P31391 388 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 GRK3P35626 688 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 PPP3CCP48454 512 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 CHRNA6Q15825 494 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 TSTQ16762 297 aaKnown RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 PRSS48Q7RTY5 328 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 ZNF605Q86T29 641 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 SLC5A8Q8N695 610 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 C7orf57Q8NEG2 295 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 APH1BQ8WW43 257 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 MED8Q96G25 268 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 PDLIM5Q96HC4 596 aaKnown RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 ZNF334Q9HCZ1 680 aaPredicted RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 TRPM5Q9NZQ8 1165 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 MBD1Q9UIS9 605 aaPredicted RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 OSGIN1Q9UJX0 560 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 PCDHGB6Q9Y5F9 930 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 APOL3O95236 402 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 LAMP1P11279 417 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 FPR1P21462 350 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 SPIBQ01892 262 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 PCBP2Q15366 365 aaKnown RBP eCLIP12□□□□□ -0.492e-6■■■■■ 33.5
HDAC4-208ENST00000463007 SNAP47Q5SQN1 464 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 ARMC4Q5T2S8 1044 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 OR4K1Q8NGD4 311 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 PIH1D2Q8WWB5 315 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 DEPDC7Q96QD5 511 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 EMILIN2Q9BXX0 1053 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 MS4A12Q9NXJ0 267 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 BTBD3Q9Y2F9 522 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 PCDHGA6Q9Y5G7 932 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 N6AMT1Q9Y5N5 214 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 KPNA5O15131 536 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 DYRK3O43781 588 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 ERN1O75460 977 aaKnown RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 ZNF821O75541 412 aaPredicted RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 CCNDBP1O95273 360 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 SOX3P41225 446 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 MAD2L1Q13257 205 aaPredicted RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 RAB33AQ14088 237 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 BCL2A1Q16548 175 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 VMACQ2NL98 169 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 PTCHD3Q3KNS1 767 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 ATG9BQ674R7 924 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 BCDIN3DQ7Z5W3 292 aaKnown RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 SLC39A11Q8N1S5 342 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 DEPDC4Q8N2C3 294 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 ZBTB2Q8N680 514 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 GGHQ92820 318 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 ASIC4Q96FT7 647 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 TRNT1Q96Q11 434 aaKnown RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 NIPSNAP1Q9BPW8 284 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 SNTG1Q9NSN8 517 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 PAQR5Q9NXK6 330 aaPredicted RBP12□□□□□ -0.49
HDAC4-208ENST00000463007 PCDH10Q9P2E7 1040 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 ZNF221Q9UK13 617 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 ACSL6Q9UKU0 697 aa12□□□□□ -0.49
HDAC4-208ENST00000463007 METTL15A6NJ78 407 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 MAGEB17A8MXT2 336 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 TNFRSF11BO00300 401 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 KMOO15229 486 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 ZW10O43264 779 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 SMAD6O43541 496 aaKnown RBP11.99□□□□□ -0.49
HDAC4-208ENST00000463007 SOX14O95416 240 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 RPLP0P05388 317 aaKnown RBP11.99□□□□□ -0.49
HDAC4-208ENST00000463007 DGKAP23743 735 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 HMGCLP35914 325 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 CD83Q01151 205 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 ABHD18Q0P651 414 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 PLD1Q13393 1074 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 CCDC85BQ15834 202 aaPredicted RBP11.99□□□□□ -0.49
HDAC4-208ENST00000463007 TSPYL5Q86VY4 417 aaPredicted RBP11.99□□□□□ -0.49
HDAC4-208ENST00000463007 BEND7Q8N7W2 519 aaPredicted RBP11.99□□□□□ -0.49
HDAC4-208ENST00000463007 ZFYVE1Q9HBF4 777 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 TM9SF3Q9HD45 589 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 FZD4Q9ULV1 537 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 IFT52Q9Y366 437 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 GPSM3Q9Y4H4 160 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 TRBV5-4A0A0C4DH59 114 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 GNG14A0A1W2PPG7 69 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 ANKRD34BA5PLL1 514 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 NRG2O14511 850 aaPredicted RBP11.99□□□□□ -0.49
HDAC4-208ENST00000463007 YY2O15391 372 aa11.99□□□□□ -0.49
HDAC4-208ENST00000463007 KCNK5O95279 499 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms