RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 FAM205BPQ63HN1 556 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 TMIGD1Q6UXZ0 262 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 TTC9BQ8N6N2 239 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 OR4M2Q8NGB6 313 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 DIRAS2Q96HU8 199 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 KATNAL1Q9BW62 490 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 RNF121Q9H920 327 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 C11orf16Q9NQ32 467 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 PCDHGA2Q9Y5H1 932 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 ALG5Q9Y673 324 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 NINQ8N4C6 2090 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 POLR1CO15160 346 aaPredicted RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 OR2B3O76000 313 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 APOL3O95236 402 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SRCP12931 536 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 HOXB9P17482 250 aaPredicted RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 CD72P21854 359 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 ENPP1P22413 925 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 CDH18Q13634 790 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SPDYE7PQ495Y7 208 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 C5orf22Q49AR2 442 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 MPPE1Q53F39 396 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SAXO2Q658L1 398 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 FAAH2Q6GMR7 532 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 LAMTOR1Q6IAA8 161 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 FAM151BQ6UXP7 276 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 GRAMD2AQ8IUY3 354 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 PAF1Q8N7H5 531 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 ZFAND1Q8TCF1 268 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 REPS1Q96D71 796 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 COPS8Q99627 209 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SLC22A4Q9H015 551 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 MIXL1Q9H2W2 232 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 ASAH2Q9NR71 780 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 FKBP14Q9NWM8 211 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 KCNN3Q9UGI6 736 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 C2orf81A6NN90 581 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 PCDH17O14917 1159 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 STX7O15400 261 aaKnown RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 ZNF250P15622 560 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 APEX1P27695 318 aaKnown RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 PSPHP78330 225 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SCN1BQ07699 218 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 FCHO2Q0JRZ9 810 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 HNRNPA0Q13151 305 aaKnown RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 DDX39BQ13838 428 aaKnown RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 DSC3Q14574 896 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 CCDC85BQ15834 202 aaPredicted RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 LIPKQ5VXJ0 399 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 PTRHD1Q6GMV3 140 aaKnown RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 LINGO4Q6UY18 593 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 CBLL1Q75N03 491 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 EIF3MQ7L2H7 374 aaKnown RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 OTOP2Q7RTS6 562 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SLC34A3Q8N130 599 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 LGI4Q8N135 537 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 VWA5B2Q8N398 1253 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SYT14Q8NB59 555 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 C7orf57Q8NEG2 295 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 ENKURQ8TC29 256 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 PMEPA1Q969W9 287 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SERPINB11Q96P15 392 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 TMEM121BQ9BXQ6 578 aaPredicted RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 GABARAPL3Q9BY60 117 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 GALNT9Q9HCQ5 603 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 MCUBQ9NWR8 336 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 DNAJC27Q9NZQ0 273 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 NLKQ9UBE8 527 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 SATB2Q9UPW6 733 aa11.3□□□□□ -0.6
CPSF3-202ENST00000460593 POLR2AP24928 1970 aaKnown RBP11.3□□□□□ -0.6
CPSF3-202ENST00000460593 A0A1W2PQL4 384 aaPredicted RBP11.29□□□□□ -0.6
CPSF3-202ENST00000460593 ARL5CA6NH57 179 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 SLC28A1O00337 649 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 AP2A2O94973 939 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 SOX14O95416 240 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 TSPAN19P0C672 248 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 GABRB1P18505 474 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 EVI2BP34910 448 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 MAN2A2P49641 1150 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 IL10RBQ08334 325 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 BBS7Q8IWZ6 715 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 TMEM86AQ8N2M4 240 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 LSMEM1Q8N8F7 131 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 FLCNQ8NFG4 579 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 ANGPTL6Q8NI99 470 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 LATS2Q9NRM7 1088 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 EVA1BQ9NVM1 165 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 UCKL1Q9NWZ5 548 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 NDRG2Q9UN36 371 aaKnown RBP11.29□□□□□ -0.6
CPSF3-202ENST00000460593 TRAPPC4Q9Y296 219 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 TNPO3Q9Y5L0 923 aaKnown RBP11.29□□□□□ -0.6
CPSF3-202ENST00000460593 FABP12A6NFH5 140 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 PRAMEF25A6NGN4 478 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 TMEM229AB2RXF0 380 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 TNFRSF10BO14763 440 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 CLDN8P56748 225 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 FLYWCH1Q4VC44 716 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 DALRD3Q5D0E6 543 aaKnown RBP11.29□□□□□ -0.6
CPSF3-202ENST00000460593 PDZK1Q5T2W1 519 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms