RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 VPS4AQ9UN37 437 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 ABCG2Q9UNQ0 655 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 U3KQV3 271 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 GNG14A0A1W2PPG7 69 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 LZTS3O60299 673 aaPredicted RBP14.5□□□□□ -0.09
LDLR-202ENST00000455727 SEC14L2O76054 403 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 HLA-EP13747 358 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 CD47Q08722 323 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 ZNF763Q0D2J5 394 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 NEDD8Q15843 81 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 CATSPEREQ5SY80 951 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 GPR107Q5VW38 600 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 UNC5DQ6UXZ4 953 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 RBM23Q86U06 439 aaKnown RBP14.5□□□□□ -0.09
LDLR-202ENST00000455727 TRIM74Q86UV6 250 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 PIK3C3Q8NEB9 887 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 OR10Q1Q8NGQ4 319 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 MAGED4Q96JG8 741 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 REEP4Q9H6H4 257 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 BAG5Q9UL15 447 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 EXO1Q9UQ84 846 aaKnown RBP14.5□□□□□ -0.09
LDLR-202ENST00000455727 PIPSLA2A3N6 862 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 H3BMQ9 156 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 MMP20O60882 483 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 UGT2B11O75310 529 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 POP7O75817 140 aaKnown RBP14.5□□□□□ -0.09
LDLR-202ENST00000455727 FPR1P21462 350 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 IGFBP5P24593 272 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 RPL3P39023 403 aaKnown RBP14.5□□□□□ -0.09
LDLR-202ENST00000455727 TMBIM6P55061 237 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 SLBPQ14493 270 aaKnown RBP eCLIP14.5□□□□□ -0.09
LDLR-202ENST00000455727 RGNQ15493 299 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 CTU2Q2VPK5 515 aaKnown RBP14.5□□□□□ -0.09
LDLR-202ENST00000455727 KDM4DQ6B0I6 523 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 XAF1Q6GPH4 301 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 ERN2Q76MJ5 926 aaKnown RBP14.5□□□□□ -0.09
LDLR-202ENST00000455727 GAB3Q8WWW8 586 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 SLC5A11Q8WWX8 675 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 SNX19Q92543 992 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 ZNF566Q969W8 418 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 COG8Q96MW5 612 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 TRIT1Q9H3H1 467 aaKnown RBP14.5□□□□□ -0.09
LDLR-202ENST00000455727 DMRT3Q9NQL9 472 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 ATAD3AQ9NVI7 634 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 HSPE1-MOB4S4R3N1 261 aa14.5□□□□□ -0.09
LDLR-202ENST00000455727 KLHL33A6NCF5 533 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 PI15O43692 258 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 CCDC159P0C7I6 412 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 IL7RP16871 459 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 PCGF2P35227 344 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 PIK3CBP42338 1070 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 ZNF234Q14588 700 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 TEAD4Q15561 434 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 MEP1AQ16819 746 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 FAM78AQ5JUQ0 283 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 NXPE4Q6UWF7 544 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 TRMT11Q7Z4G4 463 aaKnown RBP14.49□□□□□ -0.09
LDLR-202ENST00000455727 SPRED2Q7Z698 418 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 CYP4Z1Q86W10 505 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 SPARTQ8N0X7 666 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 GPR156Q8NFN8 814 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 UBE2E3Q969T4 207 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 HSH2DQ96JZ2 352 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 ASB16Q96NS5 453 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 LTB4R2Q9NPC1 389 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 DYRK4Q9NR20 520 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 OTOL1A6NHN0 477 aaPredicted RBP14.49□□□□□ -0.09
LDLR-202ENST00000455727 DNAJB5O75953 348 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 ZNF8P17098 575 aaPredicted RBP14.49□□□□□ -0.09
LDLR-202ENST00000455727 VLDLRP98155 873 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 RPA4Q13156 261 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 DCTN2Q13561 401 aaKnown RBP14.49□□□□□ -0.09
LDLR-202ENST00000455727 PDE7AQ13946 482 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 KEAP1Q14145 624 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 STARD3Q14849 445 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 C16orf72Q14CZ0 275 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 LAIR2Q6ISS4 152 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 CEP68Q76N32 757 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 ARMCX6Q7L4S7 300 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 COMMD6Q7Z4G1 85 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 SETD9Q8NE22 299 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 RAB7BQ96AH8 199 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 SAMD11Q96NU1 681 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 DPH2Q9BQC3 489 aaPredicted RBP14.49□□□□□ -0.09
LDLR-202ENST00000455727 ZDHHC5Q9C0B5 715 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 FANCEQ9HB96 536 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 CCDC177Q9NQR7 707 aaPredicted RBP14.49□□□□□ -0.09
LDLR-202ENST00000455727 SH3BP4Q9P0V3 963 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 SH2B3Q9UQQ2 575 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 NAALAD2Q9Y3Q0 740 aa14.49□□□□□ -0.09
LDLR-202ENST00000455727 HEPACAM2A8MVW5 462 aa14.48□□□□□ -0.09
LDLR-202ENST00000455727 M0QX08 132 aa14.48□□□□□ -0.09
LDLR-202ENST00000455727 BCKDKO14874 412 aa14.48□□□□□ -0.09
LDLR-202ENST00000455727 SH3BGRLO75368 114 aa14.48□□□□□ -0.09
LDLR-202ENST00000455727 ATE1O95260 518 aa14.48□□□□□ -0.09
LDLR-202ENST00000455727 RXRGP48443 463 aa14.48□□□□□ -0.09
LDLR-202ENST00000455727 ITGA1P56199 1179 aa14.48□□□□□ -0.09
LDLR-202ENST00000455727 IQCCQ4KMZ1 466 aa14.48□□□□□ -0.09
LDLR-202ENST00000455727 VTCN1Q7Z7D3 282 aa14.48□□□□□ -0.09
LDLR-202ENST00000455727 C11orf96Q7Z7L8 435 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms